Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0334
         (478 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   6e-12
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   7e-10
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   7e-10
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   7e-10
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   7e-10
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   3e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   4e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   4e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   5e-05
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               42   3e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   6.0  
SB_41737| Best HMM Match : zf-B_box (HMM E-Value=2.3e-10)              27   7.9  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = -2

Query: 123 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           SWI  RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -2

Query: 108 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -2

Query: 108 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -2

Query: 108 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 29/35 (82%), Positives = 31/35 (88%)
 Frame = -2

Query: 108 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = -2

Query: 105 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -2

Query: 105 RTSAKAFAKGVFINQERKLEVRRRLDT 25
           RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2   RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = -2

Query: 108 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           R+T+  ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 130 VKFLDRRKTNISESICQRCFHQSRTKV 50
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
 Frame = -2

Query: 108 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           R+T+  ++  + VFINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 33.9 bits (74), Expect = 0.069
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 130 VKFLDRRKTNISESICQRCFHQSRTKV 50
           VKFLD RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -2

Query: 108 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 127 KFLDRRKTNISESICQRCFHQSRTKV 50
           + L  RKTN  ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -2

Query: 108 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -1

Query: 130 VKFLDRRKTNISESICQRCFHQSRTKV 50
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -2

Query: 108 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           R+T+  ++  +  FINQERKLE RRR DT LVLT+N
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -1

Query: 130 VKFLDRRKTNISESICQRCFHQSRTKV 50
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28


>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 191 QNSEVMINRDKWGHSY-CDVRGEILGSSQDEHQRKHLP 81
           Q  EV  +++  GH Y C   GE++ S++D H+   +P
Sbjct: 7   QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 192 KTNKIEPRSYSIIPCTKYSSSFLARFEHSNLFKVKLSAHL 311
           K + ++   Y+ +    +S     RFEH+N  ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 112 DDPRISPLTSQYEC 153
           DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254


>SB_41737| Best HMM Match : zf-B_box (HMM E-Value=2.3e-10)
          Length = 511

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 225 IIPCTKYSSSFLARFEHSNLFKVKLSAHLDTHRRAPR*DFDIDRRFLERRL 377
           I+   K  +S L   E +  F  K   HLD ++RA R D D   +F+++++
Sbjct: 54  ILERAKKVTSKLTDIEQAMAFVEKAQQHLDENKRAARRDLD---QFIDKQI 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,661
Number of Sequences: 59808
Number of extensions: 270551
Number of successful extensions: 782
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)