Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0334
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.8  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 126 NSWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 4
           N  +VAR   A  F   V IN+     +  R+   L+ T+N
Sbjct: 351 NQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLLXTLN 391


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 115  RRKTNISESICQRCFHQ 65
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 328 HRDRILILTGVF*NAGSPTICSANVSVS 411
           +RD I++ TG       P +CS N  ++
Sbjct: 222 NRDLIIVQTGCTITRVIPQVCSGNCKLN 249


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 328 HRDRILILTGVF*NAGSPTICSANVSVS 411
           +RD I++ TG       P +CS N  ++
Sbjct: 222 NRDLIIVQTGCTITRVIPQVCSGNCKLN 249


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 360 NAGQYQNPIAVLF 322
           N+ QY+NPI V++
Sbjct: 64  NSHQYKNPIIVMY 76


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +3

Query: 138 VAIRMPPLIPINH-----YLGVLKTN 200
           +A+  PP++P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +3

Query: 138 VAIRMPPLIPINH-----YLGVLKTN 200
           +A+  PP++P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +3

Query: 138 VAIRMPPLIPINH-----YLGVLKTN 200
           +A+  PP++P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 206 RTEIIFYYSMHEIFKQLFSP 265
           ++E I  Y MH+I K+  SP
Sbjct: 257 KSEPIDAYEMHQISKKKLSP 276


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 389 HIVGEPAF*KTPVNIKILSRCSSVSVEVGRQFYFEQ 282
           H  G P   KT + I+ +   S + ++     YF Q
Sbjct: 56  HGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQ 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,778
Number of Sequences: 438
Number of extensions: 2679
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)