Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0334
         (478 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43930.1 68415.m05460 protein kinase family protein contains ...    29   1.6  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    29   2.2  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    29   2.2  
At4g10890.1 68417.m01772 expressed protein                             27   5.0  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    27   6.6  
At4g31630.1 68417.m04493 transcriptional factor B3 family protei...    27   6.6  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   6.6  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    27   8.7  

>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 207 EPRSYSIIPCTKYSSSFLARFEHSNLFKVKLSAHLDTHR 323
           EP    ++ C K S  F + FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 75  HLWQMLSLMFVLRRSKNFTSNVAIRMPPLIPINHYLGVLKTNKIE 209
           H+W +     +  R+ N  SN    MPPL+ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 111 RRSKNFTSNVAIRMPPLIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSFLARFEHSNLFK 290
           RRS + + N+    PP+ PI+H    L   KI+PR    +   +  +S ++      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 291 VKLSAHL 311
               AHL
Sbjct: 112 KAAEAHL 118


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 112 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 11
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 246 SSSFLARFEHSNLFKVKLSAHLDTHRRAPR*DFDIDRRFLERRLTDDMLRKRVSITADAC 425
           S SFL+   H    K K S+  D HRR+ + D    R   +R + D   +++   + D+ 
Sbjct: 232 SPSFLSSSSHERQKKRKRSSKKDKHRRSKQRD---KRHEKKRSMRDKRPKRKSRRSPDSL 288

Query: 426 TDS 434
            DS
Sbjct: 289 EDS 291


>At4g31630.1 68417.m04493 transcriptional factor B3 family protein
           similar to reproductive meristem gene 1 from [Brassica
           oleracea var. botrytis] GI:3170424, [Arabidopsis
           thaliana] GI:13604227; contains Pfam profile PF02362: B3
           DNA binding domain
          Length = 512

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 288 KVKLSAHLDTHRRAPR*DFDIDRRFLERRLTDDMLRKRVSITAD 419
           KVK +A  D H+ A R     D+  L    TD+ + KR  +T +
Sbjct: 402 KVKQAASSDGHKTADRKPRMTDQAPLAEEQTDNRVEKRAQVTEE 445


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 262 PALSTLICSK*NCRPTSTLTEEH 330
           P+ S L+C K +C   ST TE H
Sbjct: 391 PSASQLLCQKCHCAVKSTSTENH 413


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 114 RSKNFTSNVAIRMPPLIPINHYLGVLKTNKIEPRSYSI-IPCTKYSSS 254
           RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,395,036
Number of Sequences: 28952
Number of extensions: 184736
Number of successful extensions: 438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)