Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0333
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 33 0.19
10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297 31 0.57
06_01_0350 + 2534422-2535615 31 0.99
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 30 1.7
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 3.0
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 29 4.0
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 28 5.3
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 28 5.3
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 28 5.3
12_02_0877 - 23946449-23948284 28 7.0
05_04_0145 - 18391112-18392461,18392545-18392637 28 7.0
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 7.0
03_05_0883 + 28483429-28484385,28485090-28485398 27 9.2
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -2
Query: 388 HNARTSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIFYRLEALHLGDLLR 212
H RT PG G+S+ P P ++ S RS G + P S + + DLLR
Sbjct: 15 HVGRTPETPGRGSSSGSPAPGGSASKAVSFARSLGVHFPRSSAQVQPARAPPEVADLLR 73
>10_08_0929 + 21633179-21633377,21633466-21633809,21633905-21634297
Length = 311
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 385 NARTSTRPGTGASASRPNPTRPGP 314
+A T+TR +GA+ +RP PTRP P
Sbjct: 279 SAATTTRNNSGAAPARPVPTRPWP 302
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.99
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 76 PWNSNAQAEKKTLPGPLGGVFRP 8
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 351 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTYSI 247
H L + RH P L+A P S + C+LPL + +I
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPLISSAI 141
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 351 HPLPVQTRHAPVLRANP 301
H +PVQ H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 293 KLRIQFADFPYLH-ILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 135
+L ++ LH +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 16 ELMVEQFHLKVLHAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 373 STRPGTGASASRPNPTRPGPQSQSLFRSY 287
+TRPG A+ N T GPQ +FR +
Sbjct: 904 TTRPGKKLMATTANRTSKGPQDNRVFREH 932
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +1
Query: 451 DTRENRLTFRTGSGPRSPASADLPSRKSCRFVS---CAIGTFCTTAVQRSAQNW 603
D + RL +G GP S +PS+ + VS A G F T A+ Q W
Sbjct: 219 DEGDGRLGLGSGGGPGEAGSLSVPSKVNALPVSVAAVACGGFFTMALTSDGQLW 272
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 140 ILSADLENSGEGCTWRCRAGSYPYPQQVSKVKSL*SIEYVGKGSRQIGSVTS 295
+LS+ +++S C+WR S YP +V ++ L S G+ S IG++TS
Sbjct: 111 VLSSWMDDSLNFCSWRGVTCSSSYPSRVVHLE-LSSSHLTGRISGCIGNLTS 161
>12_02_0877 - 23946449-23948284
Length = 611
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 373 STRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSL 263
ST + ASA RP PT P + L + ++LP L
Sbjct: 4 STAASSSASAVRPPPTWGAPSQRRLVEQHLASLPRGL 40
>05_04_0145 - 18391112-18392461,18392545-18392637
Length = 480
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 378 EHRPDPAPAHPLPVQTRHAPVLRANPYS 295
+H AP+ P P + RHAP A YS
Sbjct: 42 DHGSSNAPSPPTPRRARHAPATTAVTYS 69
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 439 YI*YDTRENRLTFRTGSGPRSPASADLPS 525
Y+ YD ++RL F+T P S S+DLPS
Sbjct: 419 YMIYDLHKSRLGFQTSDPPPS-QSSDLPS 446
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 213 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 82
G+ P+ H P P+ S R PP R S RSE P +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
>03_05_0883 + 28483429-28484385,28485090-28485398
Length = 421
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 362 RHRRIRFPSKPDTPRSS-EPILIPKLRIQFADFP-YLHILSTRGSSP 228
RH R+R PS +P SS P+ D P +LH L R +P
Sbjct: 56 RHHRVRLPSASSSPASSPRSAAAPRAGSDDPDAPAWLHGLKRRPRTP 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,475,027
Number of Sequences: 37544
Number of extensions: 426604
Number of successful extensions: 1691
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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