Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0333
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical...    30   1.6  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    29   3.6  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U23177-9|AAA64327.1|  217|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AL034393-10|CAA22323.1|  228|Caenorhabditis elegans Hypothetical
           protein Y18D10A.12 protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 367 RPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIFY 248
           RP       RP P +P P+ +S + SY     TS   +FY
Sbjct: 47  RPPHSPRPPRPQPVQPRPECESGWTSYNRPQGTSCIKVFY 86


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 376 TSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSLT 260
           TST P T  S + P P+ P     S      SNL ++LT
Sbjct: 297 TSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALT 335


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = -3

Query: 384 THEHRPDPAPA---HPLPVQTRHAPVLRANP 301
           +HEH P PAPA    P PVQ       +A P
Sbjct: 330 SHEHSPSPAPAPVSSPTPVQQYQQSYSQAQP 360


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -2

Query: 157 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 29
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 141 IRTPPQMRCSSRSEPYLPSIGFHGT 67
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


>U23177-9|AAA64327.1|  217|Caenorhabditis elegans Hypothetical
           protein C56G2.15 protein.
          Length = 217

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 433 TVYI*YDTRENRLTFRTGSGPRSPASADLPSRKSCR 540
           T+Y   D  +  +TF     PRS  S +   +KSCR
Sbjct: 8   TLYDRQDLLKESMTFLNSEWPRSDGSREHSQKKSCR 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,452
Number of Sequences: 27780
Number of extensions: 330851
Number of successful extensions: 1192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)