Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0333
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   3.3  
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family...    29   3.3  
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family...    29   3.3  
At2g30630.2 68415.m03733 expressed protein similar to H1-1flk [A...    29   3.3  
At2g30630.1 68415.m03732 expressed protein similar to H1-1flk [A...    29   3.3  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   3.3  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   4.4  
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family...    28   5.8  
At5g22390.1 68418.m02612 expressed protein                             27   7.7  
At3g25250.1 68416.m03154 protein kinase family protein contains ...    27   7.7  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   7.7  

>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 152 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 18
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
           protein
          Length = 438

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 369 PDPAPAHPLPVQTRHAPVLRAN-PYSEVTDPICRLPLPTYS 250
           P PAP+HP   QT+  P  + N P      P      PTYS
Sbjct: 217 PPPAPSHPSSAQTQSFPQYQQNWPPQPQARPQSSGGYPTYS 257


>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
           protein
          Length = 496

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 369 PDPAPAHPLPVQTRHAPVLRAN-PYSEVTDPICRLPLPTYS 250
           P PAP+HP   QT+  P  + N P      P      PTYS
Sbjct: 275 PPPAPSHPSSAQTQSFPQYQQNWPPQPQARPQSSGGYPTYS 315


>At2g30630.2 68415.m03733 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 552

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 575 VVQNVPIAHETNRHDLRLGRSAEAGERGPDPVRN 474
           VVQ + +A   +RH  R+G   + GE G D + N
Sbjct: 345 VVQTITMARNVHRHRYRMGAGYKVGENG-DVIEN 377


>At2g30630.1 68415.m03732 expressed protein similar to H1-1flk
           [Arabidopsis thaliana] GI:388260
          Length = 531

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 575 VVQNVPIAHETNRHDLRLGRSAEAGERGPDPVRN 474
           VVQ + +A   +RH  R+G   + GE G D + N
Sbjct: 324 VVQTITMARNVHRHRYRMGAGYKVGENG-DVIEN 356


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 122 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 223
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 147 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 49
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
           protein similar to Mrs16p (GI:2737884) [Saccharomyces
           cerevisiae]; weak similarity to ataxin-2 related protein
           (GI:1679686) [Homo sapiens]
          Length = 595

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 385 NARTSTRPGTGASASRPNPTRPGPQSQS 302
           +++T +    G SASR + +RPGP + S
Sbjct: 419 SSKTKSESSFGQSASRSSESRPGPSTSS 446


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 26 ERSGKSFLFCLSVRVPWNPIEG 91
          + S KSFL  LS   PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38


>At3g25250.1 68416.m03154 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 421

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/54 (29%), Positives = 20/54 (37%)
 Frame = -3

Query: 303 PYSEVTDPICRLPLPTYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAES 142
           P +    P    P PT     RLF   + C  G  P   + VH S   + S  S
Sbjct: 176 PRTPQPSPSLSKPSPTMKRKKRLFRFTSFCNSGISPQESISVHSSSTLAVSDSS 229


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 189 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 100
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,194,979
Number of Sequences: 28952
Number of extensions: 317641
Number of successful extensions: 1052
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)