Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0331
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   2.5  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.3  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   4.3  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.3  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   5.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   10.0 
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   10.0 
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   10.0 

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 587  KLTTSDARPPSIGFDLIKALIPSL-VRV 667
            K  TS ARPP +GF   KAL+PS  +RV
Sbjct: 959  KFVTSVARPPILGF---KALMPSFCIRV 983


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +3

Query: 42  CRPTSTLTEEHRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFNRNN 221
           C P  ++ +   +RILI  R F             + I  D     AA KC +E      
Sbjct: 32  CNPCYSIEKLKSNRILIAVRLF---SFAFSSFSTTLRILRDFII--AASKCEFEKIWSTT 86

Query: 222 FSIRYWSWNYRAA 260
           FSI + S+N++++
Sbjct: 87  FSISFLSFNFKSS 99


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 489 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 352
           +P +S V  +   IPER+  + L  P       + H    EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
 Frame = -2

Query: 606 ASEVVNF-DESG*LLQIAWSSTGDASFKCLPYQLRW*F---LRLPWLSRVTGNQGSIPER 439
           + E+++F ++S  L+++   S+     +C+  +  W     LRL +L +   NQ S  E+
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINET-WPVDRALRLQFLIQQRNNQSSNEEQ 301

Query: 438 EPEKRLP 418
           + EKR+P
Sbjct: 302 KQEKRVP 308


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +2

Query: 311 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 412
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 409 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 507
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 426  VSQAPSPESNPDSPLPVTTMVVAETTIEV 512
            V+ AP+P S P  P PV+ +  A   + V
Sbjct: 1466 VTNAPAPSSAPAPPAPVSQLPPAVPNVPV 1494


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 411 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIE 509
           L ++  S+   P + PD P   T+  V+ TT+E
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVE 454


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 644 VLLLDQNQSTEASRPKSLILMNLDNFCRSHGQVPATH 534
           +LLLD+  S   S+ + L+   LDN  RS   +   H
Sbjct: 588 ILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAH 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,581
Number of Sequences: 5004
Number of extensions: 56886
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)