Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0331
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.040
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2) 28 6.0
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 7.9
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 414 DVVAVSQAPSPESNPDSPLPVTTM 485
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +3
Query: 423 AVSQAPSPESNPDSPLPVTTM 485
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3
Query: 260 SSAVIPAPIAYTKIVAVKKL 201
++AVIPAPIAY K+VAVKKL
Sbjct: 34 AAAVIPAPIAYIKVVAVKKL 53
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3
Query: 260 SSAVIPAPIAYTKIVAVKKL 201
++AVIPAPIAY K+VAVKKL
Sbjct: 79 AAAVIPAPIAYIKVVAVKKL 98
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3
Query: 260 SSAVIPAPIAYTKIVAVKKL 201
++AVIPAPIAY K+VAVKKL
Sbjct: 71 AAAVIPAPIAYIKVVAVKKL 90
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3
Query: 260 SSAVIPAPIAYTKIVAVKKL 201
++AVIPAPIAY K+VAVKKL
Sbjct: 24 AAAVIPAPIAYIKVVAVKKL 43
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -3
Query: 260 SSAVIPAPIAYTKIVAVKKL 201
++AVIPAPIAY K+VAVKKL
Sbjct: 11 AAAVIPAPIAYIKVVAVKKL 30
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -3
Query: 254 AVIPAPIAYTKIVAVKKL 201
AVIPAPIAY K+VAVKKL
Sbjct: 9 AVIPAPIAYIKVVAVKKL 26
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 424 PFLRLPLRNRTLIPRYP 474
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 274 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 399
PSN CS L YL+C +R+++F H L +G RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567
>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
Length = 918
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 207 FNRNNFSIRYWS-WNYRAAGTRLALQLFLVKIFKVYSFRLRGL 332
+ F+I W + G+R L+ F++ +KVY RL GL
Sbjct: 714 YTLGRFTIHDWKVHDTHLEGSRYTLERFMIHPWKVYDTRLEGL 756
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 405 PSLDVVAVSQAPSPESNPDSPLP 473
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,362,231
Number of Sequences: 59808
Number of extensions: 467548
Number of successful extensions: 1354
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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