Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0329
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)                 33   0.26 
SB_31604| Best HMM Match : Pox_A32 (HMM E-Value=0.019)                 29   2.4  
SB_27570| Best HMM Match : DNA_ligase_A_C (HMM E-Value=2.3)            29   3.2  
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       28   5.5  
SB_35588| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_35299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
          Length = 1851

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -3

Query: 584  RSASHVLPIFATKHSCVRFKSRISDHQHNS-EFNLMSQGRWGGIHIFTSPYSGSR*TPKC 408
            R+A H + + A++ S    + +  D QHN  EFNL  +   G + +F  PY+      + 
Sbjct: 1012 RTAGHNVLLRASEPS-QDLRDQQRDGQHNQREFNLPRRSMSGLLLLFVEPYTAGTRDSEK 1070

Query: 407  LIYPCVCRIKTAINFYP 357
             +YP +  ++  I+  P
Sbjct: 1071 FVYPDIKSVRVTIDGTP 1087



 Score = 31.1 bits (67), Expect = 0.78
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 512  DHQHNS-EFNLMSQGRWGGIHIFTSPYSGSR*TPKCLIYPCVCRIKTAINFYP 357
            D QHN  EFNL  +   G + +F  PY+      +  +YP +  ++  I+  P
Sbjct: 887  DGQHNQREFNLPRRSMSGLLLLFVEPYTAGTRDSEKFVYPDIKSVRVTIDGTP 939


>SB_31604| Best HMM Match : Pox_A32 (HMM E-Value=0.019)
          Length = 802

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -3

Query: 524 SRISDHQHNSEFNLMSQGRWGGIHIFTSPYSGSR*TPKCLIYPCVCRIKTAINFYP 357
           S+ +D   N   NL  +   G +H+F  PY+      +  +YP +  ++  I+  P
Sbjct: 251 SKGTDSIINESVNLPRRSMSGLLHLFVGPYTAGARDSEKFVYPDIKSVRVTIDGMP 306


>SB_27570| Best HMM Match : DNA_ligase_A_C (HMM E-Value=2.3)
          Length = 270

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 398 PCVCRIKTAINFYPTVDIK*C 336
           PC+CR++  I++YP  D+K C
Sbjct: 208 PCICRLQVCISWYP-CDLKYC 227


>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 393 TRVNETFWCSTATRIWRCKNVNAAPSALRHEV 488
           T + +  W +T + + RC N   AP  LRH++
Sbjct: 232 TLLAQQCWRNTGSELGRCANCPKAPCKLRHDL 263


>SB_35588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1474

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 500 NSEFNLMSQGRWGGIHIFTSPY-SGSR*TPKCLIYPCVCRIKTAINFYPT 354
           N   NL  +   G + +F  PY +G+R T K  +YP +  ++  I+  PT
Sbjct: 608 NESVNLPRRSMSGLLLLFVEPYTAGARDTEK-FVYPDIKSVRVTIDNMPT 656


>SB_35299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -3

Query: 524 SRISDHQHNSEFNLMSQGRWGGIHIFTSPYSGSR*TPKCLIYPCVCRIKTAINFYPTVD 348
           S+ +D   N   NL  +   G + +F  PY+      +  +YP +  ++  I+  P  D
Sbjct: 121 SKGTDSIINESVNLPRRSMSGMLLLFVEPYTAGARDSEKFVYPDIMSVRVTIDGMPNKD 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,976
Number of Sequences: 59808
Number of extensions: 302410
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)