Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0329
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15320.1 68417.m02344 cellulose synthase family protein simil...    28   4.5  
At1g47783.1 68414.m05315 hypothetical protein                          28   6.0  

>At4g15320.1 68417.m02344 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 828

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 630 ITHLSIYIMLVYESLEICQSRAAYFCH 550
           +THLS + +L+Y  + +   RA  FC+
Sbjct: 326 LTHLSFFDILIYLKINVNDCRAVSFCY 352


>At1g47783.1 68414.m05315 hypothetical protein
          Length = 137

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 351 NSGIEVDCRF--NSADTRVNETFWCSTATRIWR--CKNV 455
           N+G +V C F   S +TR +  F CS A+ IW    KNV
Sbjct: 5   NNGSDVKCTFCSTSIETRDHLFFSCSYASSIWTAIAKNV 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,641,773
Number of Sequences: 28952
Number of extensions: 209872
Number of successful extensions: 302
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)