Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0328
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = +2

Query: 557 NSRSYFVLFNFNNVIYLNEIQYI 625
           N  +YF+L++FN++   ++  ++
Sbjct: 381 NEGTYFILYDFNDIFEKDQASFL 403


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +3

Query: 321 NFIDDQGNPVHNPKMSMFPYILV*CKIINI*EHLINVKKNSFP*SIVDLKKK 476
           +  +D GNP+   K S    IL   ++ N+ + ++ V+ +     ++  ++K
Sbjct: 363 SMFNDSGNPILKAKPSEVVQILGWKELPNVGDEILEVENDKILQEVIKFRQK 414


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = +2

Query: 557 NSRSYFVLFNFNNVIYLNEIQYI 625
           N  +YF+L++FN++   ++  ++
Sbjct: 381 NEGTYFILYDFNDIFEKDQASFL 403


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -1

Query: 399 FYIIQEYMETLTFWDYE 349
           FY + E ++ +  WD++
Sbjct: 103 FYFVHESLKNVLLWDFQ 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,384
Number of Sequences: 438
Number of extensions: 3196
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)