Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0325
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 31 0.54
07_03_1733 + 29117547-29118203 29 2.2
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 29 2.9
03_05_0543 - 25404630-25405408,25405461-25405605 29 2.9
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192... 29 2.9
01_06_1140 - 34836967-34836996,34837107-34838771 29 2.9
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 28 5.0
01_01_0094 - 730484-731570,732030-732715 28 5.0
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781... 28 6.6
10_08_0603 - 19120434-19120538,19121209-19121310,19121430-191214... 28 6.6
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 6.6
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 6.6
05_01_0304 - 2392526-2392828 27 8.7
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 27 8.7
01_06_0956 - 33343503-33344086,33344225-33344384 27 8.7
01_01_0097 - 741881-742977,743100-743320,743438-744156 27 8.7
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 85 REQLLFTRNPSPRQSSRASLEYLLLPPRSAP--TEAPSGLTPRPFCALRRARP 237
+E + F +NP SR L LLLPP P +AP PRP+C RP
Sbjct: 369 QEVVDFLKNPD----SRRLLLLLLLPPPGPPPLAQAPPRHPPRPWCRPHTPRP 417
>07_03_1733 + 29117547-29118203
Length = 218
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 284 TCDAKFLIWYIKP*RVGRARRRAQKGLGVSPLGASVGADLGGSSK 150
TC++ + +P G ARR Q+ LG+ P G G +SK
Sbjct: 75 TCESVLVADSARPSPAGPARRHQQQQLGLGPAGGRAGKRRSRASK 119
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 498 LLTKLAHLAPSSDLRLHRSSKPEFSPI 578
+L L +LAP DLR+ SSKP F I
Sbjct: 258 MLETLVNLAPVLDLRIFSSSKPSFIKI 284
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = +1
Query: 112 PSPRQSSRASLEYLLLPP---RSAPTEAPSGLTP---RPFCALRRARP 237
P PR+ A L + PP R AP AP+ LTP + F A RR P
Sbjct: 136 PEPRRPPAAPLPGVRTPPSPPRRAPAPAPAPLTPALSQRFLAERRPAP 183
>01_07_0198 -
41918276-41918408,41918486-41918841,41919091-41919237,
41919666-41921789,41922150-41922344,41922488-41922568,
41923325-41923414,41923507-41923593,41923914-41923961
Length = 1086
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 112 PSPRQSSRAS--LEYLLLPPRSA-PTEAPSGLTPRPFCALRRARPTRYGLIYQIKNLASH 282
P R SRA+ + PPRS PT GLT P A+PT L +++ NL S
Sbjct: 817 PGSRIVSRATSPVSRRTSPPRSTTPTPTLGGLTS-PRVIANDAKPTNDSLSHEVLNLRSQ 875
Query: 283 V 285
V
Sbjct: 876 V 876
>01_06_1140 - 34836967-34836996,34837107-34838771
Length = 564
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = +1
Query: 193 GLTPRPFCALRRARPT-RYGLIYQIKNLASHVPVTVVYRQNASAPSIFRAGCFGR*VVAH 369
GL FCA R R+GL + L +P V NA R GCFG V
Sbjct: 131 GLAHDLFCASAMLRSCLRFGLADHARRLFGELPRRDVVVWNAMVNGFARLGCFGHAVECF 190
Query: 370 SLADSD 387
+ D
Sbjct: 191 RMMRED 196
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 405 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKL 512
C E PF HE ALTL + PTA L+ KL
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 372 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 467
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>12_02_1002 +
25176434-25176501,25176613-25176859,25178106-25178171,
25178754-25178822,25179007-25179080,25180850-25180991,
25181546-25181596,25181769-25181774
Length = 240
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 184 PPSVQILVVVANTPARPW 131
PPS +LV+V P RPW
Sbjct: 174 PPSSALLVIVEEGPTRPW 191
>10_08_0603 -
19120434-19120538,19121209-19121310,19121430-19121462,
19122049-19122216,19122311-19122373,19122514-19122624,
19122926-19123035,19123150-19123446,19123632-19123710,
19123811-19123919,19124000-19124041,19124743-19124873,
19126150-19126797
Length = 665
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = +1
Query: 106 RNPSPRQSSRASLEYL--LLPPRSAPTEAPSGLTPRPFC--ALRRARPTRYGLIYQIKNL 273
R +P +SS A + LP AP+ APS TPR F P ++ + L
Sbjct: 65 RGATPARSSVAGSPWAGSPLPEGIAPSPAPSATTPRRFFRRPFPPPSPAKHIKASLARRL 124
Query: 274 ASHVPVTVVYRQNASAPS 327
P T +Q A P+
Sbjct: 125 GQRSPATAQAQQAAKPPA 142
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 336 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 419
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -3
Query: 499 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 335
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>05_01_0304 - 2392526-2392828
Length = 100
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 87 RATTVHAKPFSTSVLQGLAG 146
RATTV A+P +T+V G AG
Sbjct: 40 RATTVKARPATTAVAAGFAG 59
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 109 NPSPRQSSRASLEYLLLPPRSAPTEAP 189
NP+P S+ + L PP +AP AP
Sbjct: 9 NPNPNPSTPFEVSMLFKPPSNAPAAAP 35
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 112 PSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALRR 228
PSPR R + + LPP AP +P+ P P RR
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSPA---PAPAATQRR 170
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 372 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 467
+ G +LP P C + P P +V RF LT
Sbjct: 640 VGGLQLPSRPFFCDDEPLPLLVDSCRFSSELT 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,937
Number of Sequences: 37544
Number of extensions: 431416
Number of successful extensions: 1404
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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