Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0325
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   1.8  
At1g54730.3 68414.m06241 sugar transporter, putative similar to ...    29   2.4  
At1g54730.2 68414.m06240 sugar transporter, putative similar to ...    29   2.4  
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    29   3.2  
At1g09170.1 68414.m01024 kinesin motor protein-related similar t...    29   3.2  
At1g48960.1 68414.m05487 universal stress protein (USP) family p...    28   4.2  
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat...    28   5.5  
At2g27810.2 68415.m03372 xanthine/uracil permease family protein...    28   5.5  
At2g27810.1 68415.m03371 xanthine/uracil permease family protein...    28   5.5  
At2g23340.1 68415.m02787 AP2 domain-containing transcription fac...    28   5.5  
At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / P...    27   9.6  
At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / P...    27   9.6  
At3g60320.1 68416.m06742 expressed protein contains Pfam profile...    27   9.6  
At3g55160.1 68416.m06126 expressed protein                             27   9.6  
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    27   9.6  
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ...    27   9.6  
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop...    27   9.6  

>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +1

Query: 40  PHRHKISP*A*DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRP 210
           P   K SP   D   +  + F R+P P Q     + +   P  S PT  P   TP P
Sbjct: 409 PQPPKESPQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPPTSPPVHSTPSP 465


>At1g54730.3 68414.m06241 sugar transporter, putative similar to
           ERD6 protein [Arabidopsis thaliana] GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 332

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 534 LMTVPSGPIW*AELALWDEPNVVLRRLK 451
           L  +P  P W A++  W+E  + L+RL+
Sbjct: 119 LFVIPESPRWLAKVGKWEEFEIALQRLR 146


>At1g54730.2 68414.m06240 sugar transporter, putative similar to
           ERD6 protein [Arabidopsis thaliana] GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 470

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 534 LMTVPSGPIW*AELALWDEPNVVLRRLK 451
           L  +P  P W A++  W+E  + L+RL+
Sbjct: 201 LFVIPESPRWLAKVGKWEEFEIALQRLR 228


>At1g74170.1 68414.m08590 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
 Frame = +3

Query: 210 LLRSPSRTSYSLRLNIPN*KFSITRAGNGSV*AKRFSAIHFQ--GWLLRQVSRCTLL-SG 380
           LL++ S TS+ L  +  N  F      N SV   +F+ +  Q  GW+L  +    L  +G
Sbjct: 479 LLQNNSFTSFQLPKSAHNLLFL-----NVSV--NKFNHLFLQNFGWILPHLVCVNLAYNG 531

Query: 381 FRLPWPPSCCHERPTPFM-VSHERFLGALTLRLVHPTAPVLLTKLAH 518
           F+   P S  + +   F+ +SH RF G L  R +     + + KL+H
Sbjct: 532 FQGNLPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSH 578


>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
           GB:AAB61066
          Length = 1010

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 229 ARPTRYGLIYQIKNLASHVPVTVVYRQNASAPS 327
           ++PT +G+  Q K   S VPV  V    +S PS
Sbjct: 192 SKPTTFGIAKQYKRKDSEVPVDAVTNSPSSTPS 224


>At1g48960.1 68414.m05487 universal stress protein (USP) family
           protein contains Pfam PF00582: universal stress protein
           family; similar to hypothetical protein GI:7770340 from
           [Arabidopsis thaliana]
          Length = 219

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 130 SRASLEYLLLPPRSAPTEAPSGLTPRPFCALRRARPTR 243
           S+  +  L +P    PT+ P  L P P   L R RP R
Sbjct: 172 SQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRPRR 209


>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 520

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 413 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 306
           +T+  WP  SESAK+     L + P  ++   +  C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386


>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 660

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 457 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 356
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 709

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 457 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 356
           P KR  D+   VGRS   DG +GS +P+R   R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147


>At2g23340.1 68415.m02787 AP2 domain-containing transcription
           factor, putative 
          Length = 176

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 227 RRRAQKGLGVSPLGASVGADLGGSSKYSSEALED*RGEG 111
           R+ A+ G  V  LGA+V  + GG ++   E +E+ R  G
Sbjct: 109 RKAAEVGAQVDALGATVVVNTGGENRGDYEKIENCRKSG 147


>At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / PAPS
           reductase homolog (PRH26) identical to
           5'-adenylylsulfate reductase [Arabidopsis thaliana]
           GI:2738760; identical to cDNA PAPS reductase homolog
           (PRH26) GI:1710113
          Length = 458

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 446 LMGHHERRWSLMTAGRWPWKSESAKEC 366
           L G HER       GRW W+   AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314


>At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / PAPS
           reductase homolog (PRH19) identical to
           5'-adenylylsulfate reductase [Arabidopsis thaliana]
           GI:2738756; identical to cDNA PAPS reductase homolog
           (PRH19) GI:1710111
          Length = 465

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 446 LMGHHERRWSLMTAGRWPWKSESAKEC 366
           L G HER       GRW W+   AKEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322


>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
           PF04782: protein of unknown function (DUF632), PF04783:
           protein of unknown function (DUF630)
          Length = 796

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 97  LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTP 204
           +F   P P  S ++  +++  PPR +P+ APS + P
Sbjct: 70  VFLHTPPPPLSEQSPAKFV--PPRFSPSPAPSSVYP 103


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -1

Query: 552  NDEAGDLMTVPSGPIW*AELAL 487
            ND   DL TV SG IW AE AL
Sbjct: 2052 NDSLMDLSTVLSGEIWEAEPAL 2073


>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = -2

Query: 392 WKSESAKECATTHLPKQPALKMD-------GAEAFCLYTTVTGTCDAK 270
           W+ E  KE   TH P    L +D       G +A+   T V   CDA+
Sbjct: 250 WRRECIKEMNATHSPSCSLLFLDCGSLHDPGRQAWMRITRVLSNCDAR 297


>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 304

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +2

Query: 83  LASNYCSRETLLHVSPPGPRWSICYYHQDLHRRRLQ 190
           L+SN      LL  SP  P W   Y H   H R LQ
Sbjct: 259 LSSNLALSNLLLQSSPSQPLWLYLYLHH--HHRPLQ 292


>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
           chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
           5'-adenylylsulfate (APS) sulfotransferase 2 /
           3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
           homolog 43 (PRH-43) identical to SP|P92981
           5'-adenylylsulfate reductase 2, chloroplast precursor
           (EC 1.8.4.9) (Adenosine 5'-phosphosulfate
           5'-adenylylsulfate sulfotransferase 2) (APS
           sulfotransferase 2) (Thioredoxin independent APS
           reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
           reductase homolog 43) (PAPS reductase homolog 43)
           (Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
           reductase homolog (PRH43) GI:1710115
          Length = 454

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 446 LMGHHERRWSLMTAGRWPWKSESAKEC 366
           L G HER       GRW W+   AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,765,275
Number of Sequences: 28952
Number of extensions: 301875
Number of successful extensions: 835
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)