Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0324
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    29   3.4  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   7.9  
06_03_0836 - 25249491-25249511,25249883-25250050,25250721-252509...    28   7.9  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   7.9  

>02_05_0602 +
           30283893-30284170,30286259-30286305,30286534-30287510,
           30287611-30287920,30288561-30290197
          Length = 1082

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 185 KCWDPKDGELCLVRSKSGETLMEAVAILTCKSIVGTGYRGERLIEPSSSW 334
           KC+ P +  L ++R     T   A A+    S+V   +RG  ++E  SSW
Sbjct: 672 KCFMPDELNLSIIRVLLALTA-HAKALAAVVSVVRENHRGHSIVELMSSW 720


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 275 KSIVGTGYRGERLIEPSSSWFRPKFPSG 358
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>06_03_0836 -
           25249491-25249511,25249883-25250050,25250721-25250920,
           25251000-25251324,25251981-25252045,25252231-25252552,
           25252650-25252730
          Length = 393

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 470 TPAYSNDEAGDLMRCQVGQFW*AELALWDEPNVVFK 577
           T  Y+N+    ++ C +G+FW  EL   ++P+V+ +
Sbjct: 168 TETYTNNHQNAIIVCPLGKFWRVELQR-EQPDVLLR 202


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 456 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 295
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,297,225
Number of Sequences: 37544
Number of extensions: 424536
Number of successful extensions: 918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)