Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0324
         (681 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    26   0.96 
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    25   2.2  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   8.9  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 26.2 bits (55), Expect = 0.96
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = +1

Query: 73  RTLDVRSGRMKL-SSYVRD----FRTPEASRFQSVNEGAL*AQMLGPERW*TM-PGQVEV 234
           RT  V +G  ++  SY +D    + T E    +SV  G     +LGP  W TM  G +++
Sbjct: 588 RTKRVPAGLQRIIHSYFQDRELVYETSEGPVVRSVTAGVPQGSILGPTLWNTMYDGVLDI 647

Query: 235 RGNPD 249
              PD
Sbjct: 648 ALPPD 652


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 639 PSCCHERPTPFMVSHERFLGALNTTFGSSHSAS 541
           P   H + +P   SHE F     T+ G SH  S
Sbjct: 58  PHVFHPQSSPDWSSHENFSTPPQTSLGLSHGPS 90


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 414 RGIGAETTSTYSQTLNG*ELRLTRTMKPEI*CGAKWANFGKQNWRCGMNQT*CLRRLKNA 593
           +GI  + T+ YS   NG   R  RT+     C    A  G + W   +N    L+ + ++
Sbjct: 160 KGIVPQFTAGYSPQQNGVAERKNRTLVEMARCMLIDAKLGYRFWAEAINAAVYLQNISSS 219


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,204
Number of Sequences: 2352
Number of extensions: 14394
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)