Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0323
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0272 - 23738514-23738817,23739382-23740748                       32   0.27 
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622...    31   0.63 
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   2.5  
01_01_0613 - 4571689-4572348                                           28   3.3  
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    28   4.4  
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149...    27   5.8  
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    27   7.7  

>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 319 GHLRYS-LTDVPPQSNSPPGSVLNRITREF*TATSVSATSPLCTLGTKH 176
           G  RY+ +TDVPP  N P   V N IT EF T   +   +P  ++ + H
Sbjct: 398 GVFRYNQMTDVPPAVNGPLHVVPNVITAEFRTFIEIIFENPEKSMDSVH 446


>03_05_1065 +
           30061588-30061883,30061995-30062056,30062196-30062276,
           30062391-30062464,30062547-30062629,30063044-30063147,
           30063526-30063665,30063736-30063783,30063939-30063991,
           30064178-30064262,30064346-30064412,30064496-30064606,
           30065262-30065283,30066244-30071110,30071186-30071374,
           30071463-30071577,30072329-30073388,30074247-30074694,
           30074966-30075019,30075105-30076898,30076989-30077949,
           30078271-30078384,30078459-30078613,30078934-30079026,
           30079341-30079613,30093423-30093975,30094465-30094540,
           30094619-30094718
          Length = 4025

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -2

Query: 373 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLNRITREF*TA-TSVSATSPL 197
           +F P+ P     LA  + GH R+ + D   +  S  G + N+  R +     +VSA + L
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAG-IFNKGDRSYAVRRAAVSAYAAL 424

Query: 196 CTLGTKHRAPADIIDR 149
           C +   H AP  + DR
Sbjct: 425 CAVLCAHEAPGGLPDR 440


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 203 TTLHAWNETPCARRYY 156
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>01_01_0613 - 4571689-4572348
          Length = 219

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 328 LALGHLRYSLTDVPPQSNSPPGSVLNRITREF*TATSVSATSPLCTLGTKHRAPADIID 152
           L LGH  YSL   PP S   P  V      ++  ++S SA +    +G + R+  +++D
Sbjct: 51  LELGHSVYSLPLPPPPSQ--PVVVAGGNNDQYGVSSSSSAAATTSRIGFRTRSEVEVLD 107


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +3

Query: 249 RFRTLPGGEFDWGGTSVKE*RRCPKASSARTETSRGAKGQKLA*SRCSVRIGTAKAR 419
           +FRTL   +  WGG    +    PK   AR ET    K Q    S  + + G  KAR
Sbjct: 412 QFRTLRWEDTKWGGLKAGQVMMEPKPVFARIETETDEKDQS---SSKATKGGKKKAR 465


>02_04_0220 -
           21014225-21014386,21014492-21014572,21014739-21014938,
           21014999-21015157,21015248-21015377,21015520-21015673,
           21015785-21015867,21015981-21016040,21016131-21016217
          Length = 371

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +1

Query: 226 PFKTPA*SGSGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 378
           PF        GH     +T A    KNNAG L+  Q  Q+    Q GK  L
Sbjct: 203 PFLAEWVRNKGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252


>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 358 APREVSVLAELALGHLR--YSLTDVPPQSNSPPGSVLNRITREF*TATSVSATSPL 197
           +PR    LA+    HL   ++ T  PP S+SP  ++L  +        + +ATS L
Sbjct: 9   SPRTARQLADALTAHLSLYHAATPPPPSSSSPRAAILRWLASLSPPCRAAAATSLL 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,825
Number of Sequences: 37544
Number of extensions: 322442
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)