Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0323
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical pr...    30   0.74 
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical pr...    28   3.9  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>Z69883-6|CAA93744.2|  461|Caenorhabditis elegans Hypothetical
           protein C27C12.2 protein.
          Length = 461

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = -2

Query: 316 HLRYSLTDVPPQSNSPPGSVLNRITREF*TATSVSAT 206
           HL  SL +  PQSNS P +V+ R+ R   T TS S T
Sbjct: 248 HLGSSLQNEHPQSNSRPSTVIPRVQR---TNTSASLT 281


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 190 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 56
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>Z37139-5|CAA85490.1|  558|Caenorhabditis elegans Hypothetical
           protein C14B1.9 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = -2

Query: 355 PREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLNRI-TREF*TATSVSATSPLCTLGTK 179
           P+++S+    ++G    +  ++P Q NSP  +V N   T +   A S + ++       K
Sbjct: 252 PKKISLDKPKSVGSPSNAHNEIPSQKNSPKSAVKNETDTEDALMAKSGNLSTAAVMFKNK 311

Query: 178 -HRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 68
            H      +D    P N    ET+  ++ +   ++ ++
Sbjct: 312 VHTLQCQFLDSHGNPQNTPDFETLSKILSEHFDKKELT 349


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 298 TDVPPQSNSPPGSVLNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPP-NRVS 122
           T   P+S+S       R+   + T T  +A S      T  +AP  I DR   P  NR+S
Sbjct: 69  TTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPWYIKDRTAWPTYNRIS 128

Query: 121 NE 116
            E
Sbjct: 129 AE 130


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 229 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 113
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 661


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 229 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 113
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 717


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,370,153
Number of Sequences: 27780
Number of extensions: 243023
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)