Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0323
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   2.9  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   3.8  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   3.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 86  SSLKNHYFHCFITYSVGRK 142
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 314 PALFFDRCTAPVKLPAWQCPEPDHAGVL 231
           PA+ + R     ++P  +CP  +H G L
Sbjct: 180 PAIVWWRAVRTEEVPEDKCPFTEHLGYL 207


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 65  VGDRFARSSLKNHYFHCFI 121
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 65  VGDRFARSSLKNHYFHCFI 121
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 221 RRRLKLPRDPVQDTARRGV 277
           +R    PR+P Q T++ G+
Sbjct: 165 KRSWSRPREPAQTTSKAGI 183


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 239 PRDPVQDTARRGV 277
           PR+P Q T++ G+
Sbjct: 49  PREPAQTTSKAGI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,466
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)