Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0323
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.40 
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   1.6  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   3.7  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   3.7  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    27   4.9  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    27   4.9  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   4.9  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    27   6.5  
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si...    27   6.5  
At3g62370.1 68416.m07006 expressed protein                             27   8.6  
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ...    27   8.6  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 190 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 44
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 329 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 442
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 154 DRAPLPPNRVSNETMKVVVFQRRSRET 74
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 205 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 68
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 145 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 35
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 145 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 35
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 193  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 98
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -2

Query: 304 SLTDVPPQSNSPPGSVLNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 125
           S T  PP S +PPG   +  +    +A S  ATSP  ++  K  +P       P PP   
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSS---SAVS-PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224

Query: 124 S 122
           S
Sbjct: 225 S 225


>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 429

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 229 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 104
           TA +   T+   T+G  +  PA I     L P+R++ + + +
Sbjct: 18  TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 251 PDHAGVLNGDERFRHVTTLHAWN 183
           P   G  NG +RF H+  ++AWN
Sbjct: 171 PIDNGEGNGGDRFGHLVDIYAWN 193


>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 499

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = -2

Query: 280 SNSPPGSVLNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVV 101
           S++ P  VL+ I+       S S   PL  +   + +P +    AP P NR   ET + +
Sbjct: 37  SSTNPNRVLDHIS------VSESTDVPLIIIKNSNSSPQN---NAPKPQNREGAETEEPI 87

Query: 100 VFQRRSRETISHLCYTSHVSLQCQTRV 20
              R   +T S +      +L+C  RV
Sbjct: 88  KENRGGTKTESSMNQNRGETLRCIQRV 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,876,794
Number of Sequences: 28952
Number of extensions: 231753
Number of successful extensions: 593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)