Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0321
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   2.6  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   2.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    24   8.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   8.0  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   8.0  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    24   8.0  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 116 ESQVILAFCLHSCHSFLWQMYQLELTNTEKLY 21
           +SQ  LAF L   H  L ++YQ   T+   LY
Sbjct: 402 DSQEFLAFLLDGLHEDLNRIYQKPYTSKPDLY 433


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 86  VNKRLKLLVIPLRLNNAKVEETALAKFETWWHLIVKFSTR 205
           V KRL+ + + +   NA + +     F  WW L+++   R
Sbjct: 302 VRKRLEFVGVDMDQLNASISQQRCDMFYGWWLLLLEKEMR 341


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +2

Query: 176  WHLIVKFSTRLGVFTDVVLTSFLHFCL----ENTMHQE 277
            W LI + +  L    D++L SF+  C+    EN  HQE
Sbjct: 1581 WKLICQKACSLLFKYDILLDSFIEDCIRMFFENGNHQE 1618


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 171 VSNLARAVSSTFALLSLSGITSNFSLLFTQLSFVSLA 61
           V ++ + ++S  A ++ + I  N  +L   LSF+SLA
Sbjct: 374 VCSVTKKLASQAANVTFAAILVNCGVLSRNLSFISLA 410


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 56  YQLELTNTEKLYNDYQHQ 3
           Y  + TN +K YN+++HQ
Sbjct: 300 YLRKKTNCDKWYNEHEHQ 317


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -3

Query: 264 VFSKQKCRNDVSTTSVNTPSLVLNFTIKCHHVSNLARAVSSTFALLSL 121
           VFS  +   ++     NTP +   F    H + N  +   S + LL++
Sbjct: 521 VFSIHQTHLELHGKDRNTPPMAKTFVTYLHRILNAIKETYSGYLLLTV 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,362,275
Number of Sequences: 5004
Number of extensions: 25176
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)