Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0321
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246...    29   1.1  
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058...    29   1.4  
09_02_0590 - 10978335-10978728,10978855-10979044,10979130-109791...    28   2.5  
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743...    27   4.3  
10_08_0374 - 17312430-17312513,17312794-17313029,17313081-173132...    26   7.6  
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040...    26   7.6  

>06_03_1403 +
           29923503-29923821,29924269-29924405,29924495-29924647,
           29924690-29925280,29925523-29925597,29925901-29926169,
           29927238-29927331
          Length = 545

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +2

Query: 50  IDTFAKETNDNCVNKRLKLLVIPLRLNNAKVEETALA 160
           +D F+K  N+   N RLK+L I  +L++ K+E+T ++
Sbjct: 319 LDKFSKLQNEQNAN-RLKVLEIQQKLSSEKIEQTKIS 354


>06_03_0712 +
           23803597-23803945,23804118-23805479,23805743-23805811,
           23806050-23806330,23806817-23807076,23807521-23807689,
           23807796-23808068,23808251-23808499
          Length = 1003

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 128 NNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSF----LHFCLENTMH 271
           N  K+  +  A+ E+ W LIV+F         V++ S+    LH    N MH
Sbjct: 476 NKEKILSSLHAQKESGWRLIVRFLFNFTFIFSVIIASYVIAHLHLSKPNAMH 527


>09_02_0590 -
           10978335-10978728,10978855-10979044,10979130-10979198,
           10980061-10980187,10980562-10980824,10980928-10981076,
           10981186-10981260,10983391-10983462,10983554-10983692,
           10983796-10984265,10985278-10985854,10986997-10987063
          Length = 863

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 186 IKCHHVSN-LARAVSSTFALLSLSGITSNFSLLFTQLSFVSLA 61
           +KC    + + R +S   +   L+G  SNF  LFT L +++L+
Sbjct: 403 VKCSDAGDKIMRIISLDLSNSKLNGSISNFFTLFTALKYLNLS 445


>03_02_0320 +
           7437528-7437623,7437725-7437772,7438885-7438994,
           7439651-7439735,7439839-7440115,7440296-7440454,
           7440563-7440666,7440930-7441168,7441265-7441583,
           7441665-7442069,7442157-7442294,7442376-7442555
          Length = 719

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 92  KRLKLLVIPLRLNNAKVEETALAKFETWWHLIVKFS 199
           +R+K L+ P    +AK  +  +A    WW L+ KFS
Sbjct: 58  RRMKKLLGPEFSLDAKNSKDTIAAMLCWWSLLEKFS 93


>10_08_0374 -
           17312430-17312513,17312794-17313029,17313081-17313261,
           17313335-17313445,17313495-17313722,17313862-17313999,
           17314159-17314375,17314452-17314564,17314919-17314921
          Length = 436

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +2

Query: 38  WSVLIDTFAKETNDNCVNKRLKLLVIPLRLNNAKVEETALAKFETWWHLIVK 193
           W+   +  A++   NC+ +    L+   R+      +  + K E WW L  K
Sbjct: 116 WAEGTEQAARKVVRNCIKRLFSHLIYETRILAVLNYQRNILKVEPWWFLKAK 167


>01_07_0031 -
           40603243-40603491,40603617-40603799,40603896-40604084,
           40604244-40604916,40605583-40605737
          Length = 482

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 165 NLARAVSSTFALLS--LSGITSNFSLLFTQLSFVSLANVS 52
           NL R V+    L+   + G+TSN S+ +T   F SLA  S
Sbjct: 105 NLCRPVTDLLPLIGSGVRGVTSNPSVRYTTYFFCSLAPCS 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,951,006
Number of Sequences: 37544
Number of extensions: 130019
Number of successful extensions: 390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)