Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0321
(356 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10582| Best HMM Match : DUF1168 (HMM E-Value=1.8) 31 0.28
SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.64
SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.84
SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.84
SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.84
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.84
SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20) 29 0.84
SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37) 29 0.84
SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4) 29 1.1
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 28 1.9
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30) 27 3.4
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 27 4.5
SB_16378| Best HMM Match : DCX (HMM E-Value=0.7) 27 4.5
SB_19936| Best HMM Match : fn3 (HMM E-Value=5.8e-20) 26 7.8
>SB_10582| Best HMM Match : DUF1168 (HMM E-Value=1.8)
Length = 454
Score = 31.1 bits (67), Expect = 0.28
Identities = 24/76 (31%), Positives = 42/76 (55%)
Frame = -3
Query: 231 STTSVNTPSLVLNFTIKCHHVSNLARAVSSTFALLSLSGITSNFSLLFTQLSFVSLANVS 52
S+T V P+L L+ +K H V++L + + + + +SLS SN ++ S S+ S
Sbjct: 247 SSTEV-IPALTLDSRLKSHSVTSLGSSGNKSDSFMSLSSNASNGPIMRKSGSSASVG--S 303
Query: 51 IRTDQH*KALQRLSAS 4
I + QH + ++ SAS
Sbjct: 304 IHSFQHGELVRVRSAS 319
>SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 29.9 bits (64), Expect = 0.64
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 80 NCVNKRLKLLVIPLRLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLHFCLE 259
NCVN+ K V + N+KVE K TWW + K S +T+ LH +
Sbjct: 274 NCVNRERK--VCRAKFYNSKVECLKDCKPATWWREVKKLSGISAPAGGNGITNLLHHIAD 331
Query: 260 NTM 268
+++
Sbjct: 332 DSV 334
>SB_32967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.5 bits (63), Expect = 0.84
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 122 RLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLHFCLENTMHQEN 280
R+ A L+K W + T+LGV+ +VLTS L+ C T++Q +
Sbjct: 196 RIAKASASFGRLSK-TVWNRRGISTETKLGVYRAIVLTSLLYACETWTVYQRH 247
>SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 29.5 bits (63), Expect = 0.84
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 122 RLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLHFCLENTMHQEN 280
R+ A L+K W + T+LGV+ +VLTS L+ C T++Q +
Sbjct: 103 RIAKASASFGRLSK-TVWNRRGISTETKLGVYRAIVLTSLLYACETWTVYQRH 154
>SB_56454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 29.5 bits (63), Expect = 0.84
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 122 RLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLHFCLENTMHQEN 280
R+ A L+K W + T+LGV+ +VLTS L+ C T++Q +
Sbjct: 347 RIAKASASFGRLSK-TVWNRRGISTETKLGVYRAIVLTSLLYACETWTVYQRH 398
>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 29.5 bits (63), Expect = 0.84
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 122 RLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLHFCLENTMHQEN 280
R+ A L+K W + T+LGV+ +VLTS L+ C T++Q +
Sbjct: 137 RIAKASASFGRLSK-TVWNRRGISTETKLGVYRAIVLTSLLYACETWTVYQRH 188
>SB_24913| Best HMM Match : RVT_1 (HMM E-Value=1e-20)
Length = 906
Score = 29.5 bits (63), Expect = 0.84
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 122 RLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLHFCLENTMHQEN 280
R+ A L+K W + T+LGV+ +VLTS L+ C T++Q +
Sbjct: 647 RIAKASASFGRLSK-TVWNRRGISTETKLGVYRAIVLTSLLYACETWTVYQRH 698
>SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37)
Length = 565
Score = 29.5 bits (63), Expect = 0.84
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 122 RLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLHFCLENTMHQEN 280
R+ A L+K W + T+LGV+ +VLTS L+ C T++Q +
Sbjct: 342 RIAKASASFGRLSK-TVWNRRGISTETKLGVYRAIVLTSLLYACETWTVYQRH 393
>SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 50 IDTFAKETNDNCVNKRLKLLVIPLRLNNAKVEETALAKFET 172
I+ FA + + NC++ +K V+ L LN ++++ +ET
Sbjct: 833 IEDFAAKISGNCISCGIKEAVLSLELNQTQIKQEYEIDYET 873
>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
Length = 254
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 173 WWHLIVKFSTRLGVFTDVVLTSFLHFCLENTMHQEN 280
W + T+LGV+ +VLTS L+ C T++Q +
Sbjct: 53 WNRRGISTETKLGVYRAIVLTSLLYACETWTVYQRH 88
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 271 SGKPSFIPGQISDKLSMKCVDAFVE 345
SG P+ PGQIS L M+ VD +++
Sbjct: 2953 SGSPASTPGQISPFLKMRDVDRYLD 2977
>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
Length = 824
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 5 DADNRCRAFQCWSVLIDTFAKETNDNCVNKRLKLLVIPLRLNNAKVEETAL 157
+ D C+ +C + T + +DN V+KRLK P N A E L
Sbjct: 649 ETDTGCKCEKCGKIFPRTCGLKRHDNRVHKRLKPHACPF-CNKAFAENRCL 698
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 187 SEIQYETWC-IY*CSTDIISTFLFGKYNASGKPS 285
SEI+Y +C +Y D +STFL K ASG PS
Sbjct: 357 SEIRYVDFCSLY--PWDYVSTFLKMKQEASGWPS 388
>SB_16378| Best HMM Match : DCX (HMM E-Value=0.7)
Length = 754
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 122 RLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLHFC 253
R+ A L+K W + T+LGV+ +VLTS L+ C
Sbjct: 161 RIAKASASFGRLSK-TVWNRRGISTETKLGVYRAIVLTSLLYAC 203
>SB_19936| Best HMM Match : fn3 (HMM E-Value=5.8e-20)
Length = 365
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 29 FQCWSVLIDTFAKETNDNCVNKRLKLLVIPLRLNNAKVEETAL 157
FQ WS++ + V K V PL LN + TAL
Sbjct: 29 FQSWSLVAMVVGTFIGTSAVTKTCPPNVPPLNLNGTSINSTAL 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,677,035
Number of Sequences: 59808
Number of extensions: 166572
Number of successful extensions: 389
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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