Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0321
         (356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50910.1 68418.m06312 hypothetical protein                          28   2.1  
At5g11850.1 68418.m01385 protein kinase family protein contains ...    27   2.8  
At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identic...    27   2.8  
At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein sim...    27   2.8  
At2g44190.1 68415.m05497 expressed protein  contains Pfam profil...    27   3.7  
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot...    27   3.7  
At5g60290.1 68418.m07556 hypothetical protein                          26   6.4  

>At5g50910.1 68418.m06312 hypothetical protein 
          Length = 116

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 176 WHLIVKFSTRLGVFTDVVLTSFLHFCLENTMHQENPHLFLVKYQTSYQ*N 325
           WH+IV  +   G   +   T F+     N MH  +PH+F+ KY TSY  N
Sbjct: 6   WHIIVSAN---GFILNQWTTHFV-----NLMHIISPHMFISKY-TSYNFN 46


>At5g11850.1 68418.m01385 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K delta-1 protein kinase GI:2253009
          Length = 880

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 268 ASGKPSFIPGQISDKLSMKCVDAFVE-IGG 354
           AS  P F PGQ+S  L+ K  +  VE +GG
Sbjct: 220 ASECPDFAPGQVSSDLTQKIANIVVEQMGG 249


>At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identical
           to YABBY3 [Arabidopsis thaliana] GI:4928753
          Length = 240

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 234 VSTTSVNTPSLVLNFTIKCHHVSNLARAVSSTFALL--SLSGITSNF 100
           V   SV   SL    T++C H SNL     S  ALL  S+S +  +F
Sbjct: 36  VLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSF 82


>At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein
           similar to beta-xylosidase A GB:BAA28267 from
           [Aspergillus oryzae]
          Length = 781

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +1

Query: 232 DIISTFLFGKYNASGK--PSFIPGQISDKLSM 321
           D I+  +FG YN SG+   ++ P + +DK++M
Sbjct: 562 DAIAQVIFGDYNPSGRLPETWYPQEFADKVAM 593


>At2g44190.1 68415.m05497 expressed protein  contains Pfam profile:
           PF04484 family of unknown function (DUF566)
          Length = 474

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +2

Query: 68  ETNDNCVNKRLKLLVIPLRLNNAKVEETALAKFETWWHLIVKFSTRLGVFTDVVLTSFLH 247
           E +D+   KR++L  +       ++ E+     E W  L  +FST L   T+ +L + L 
Sbjct: 315 ELSDSVQRKRIELQHLQRVKAVTEIVESQTPSLEQWAVLEDEFSTSLLETTEALLNASLR 374

Query: 248 FCLENTMHQENPHL 289
             L++ +  E   L
Sbjct: 375 LPLDSKIKVETKEL 388


>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
           / BED zinc finger domain-containing protein /
           transposase-related weak similarity to Tam3-transposase
           [Antirrhinum majus] GI:16064; contains Pfam profiles
           PF02892: BED zinc finger, PF05699: hAT family
           dimerisation domain
          Length = 676

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 50  IDTFAKETNDNCVNKRLKLLVIPLRLNN 133
           +D+F K TND C NK L + +  L ++N
Sbjct: 404 LDSFHKTTNDMCTNKDLTVGLALLFMDN 431


>At5g60290.1 68418.m07556 hypothetical protein 
          Length = 153

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 241 STFLFGKYNASGKPSFIPGQISDKLSMKCVDAFVE 345
           S +L G Y+A G  S I  Q  DK  +  ++AF++
Sbjct: 34  SAYLTGNYSAHGSWSRISIQKKDKTYVDVIEAFMQ 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,825,856
Number of Sequences: 28952
Number of extensions: 119886
Number of successful extensions: 334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)