Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0320
         (307 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   3.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    20   5.1  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   5.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   5.1  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    19   8.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    19   8.8  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 302 LYPVPTIDLHVRIATVSIRVS 240
           L+P PT ++HV    V + ++
Sbjct: 63  LWPKPTGEVHVGTTLVKVNIN 83


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 5.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 205 GGELCLVRSKSGETLMET 258
           GGE CL   +  ET ++T
Sbjct: 549 GGEACLWSEQFDETSLDT 566


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 20.2 bits (40), Expect = 5.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 205 GGELCLVRSKSGETLMET 258
           GGE+CL   + G   +ET
Sbjct: 507 GGEVCLWSEQVGPDSLET 524


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 196 DPKGGELCLVRSKSGETLMETVAILT 273
           +  G  LC+V +  G   +ETV  +T
Sbjct: 300 EDSGKYLCVVNNSVGGESVETVLTVT 325


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 241 PLTST*PGIVHHLSGPSIC 185
           P  S  PG      GPSIC
Sbjct: 44  PCVSCGPGQSGQCFGPSIC 62


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 209 PPFGSQHLCS 180
           P  GS+HLCS
Sbjct: 78  PLSGSKHLCS 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,903
Number of Sequences: 336
Number of extensions: 1195
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5518292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)