Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0320
         (307 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0194 + 11440115-11440302,11440445-11440583                       29   0.95 
11_06_0661 - 26009838-26010950,26011302-26011802                       27   2.9  
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843...    27   2.9  
08_02_0544 + 18445810-18445995,18446894-18447053,18448186-184483...    27   3.8  
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507...    27   3.8  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    26   6.7  
10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219...    25   8.9  
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251...    25   8.9  

>11_03_0194 + 11440115-11440302,11440445-11440583
          Length = 108

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 184 HKCWDPKGGELCLVRSKSGETLMETVAILTC 276
           H+C   +GG++CL R  +G+ L     +L C
Sbjct: 62  HRCSKLRGGQICLPRPLTGDVLEYRWGLLGC 92


>11_06_0661 - 26009838-26010950,26011302-26011802
          Length = 537

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 211 HHLSGPSICAQSAPSFTDWK 152
           HHL GP+  + S+P    WK
Sbjct: 297 HHLHGPTSSSSSSPVMASWK 316


>02_05_0847 +
           32183249-32183486,32184001-32184118,32184231-32184376,
           32184591-32186080
          Length = 663

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 193 WDPKGGELCLVRSKSGETLMETVAILTCKS 282
           WD +  E+  VRS S E  + +  IL+C++
Sbjct: 606 WDKERSEVACVRSTSVEPCLHSPPILSCRA 635


>08_02_0544 +
           18445810-18445995,18446894-18447053,18448186-18448386,
           18448474-18448538,18448697-18448761,18448784-18448874,
           18448965-18449051,18449204-18449254,18449604-18449825,
           18449987-18450080,18450159-18450299,18450391-18450476
          Length = 482

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 RKVVNYAWSGRSQGKP*WRP*RF 268
           RKVVN+ WSG +     W P  F
Sbjct: 44  RKVVNFLWSGEASYHHVWPPMEF 66


>06_03_1406 -
           29949367-29949556,29949753-29949837,29950625-29950791,
           29951232-29952049
          Length = 419

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 184 HKCWDPKGGELCLVRSKSGETLMETVAIL 270
           H+ +    G+L L+R +SG+T +  +A+L
Sbjct: 88  HRSYPLAAGDLSLLRIRSGDTSLAAIALL 116


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 172  ARSEHKCWDPKGGELCLVRSKSGETLMETVAILTCKSIVGT 294
            A+  +K W+ K GEL  V   +GET  +   +   + I+ T
Sbjct: 1393 AKERYKDWESKFGELARVVELTGETAADLKLLDKGEIIIST 1433


>10_06_0087 -
           10520708-10520823,10521041-10521130,10521571-10521901,
           10522248-10522409,10522506-10522726,10523852-10524056
          Length = 374

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 199 PKGGELCLVRSKSGE-TLMETVAILTCKSIVG 291
           PK GE  +++SK+G   ++ TV I T   IVG
Sbjct: 74  PKNGENAIIKSKTGYWKVVGTVRIPTSTVIVG 105


>03_02_0882 - 12121917-12124446,12124739-12124919,12125057-12125134,
            12125731-12125764,12125864-12125975,12126053-12126238,
            12126505-12126575
          Length = 1063

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 268  ESLRSPSGFPLTST*PGIVHHLSGPSICAQSAPSFTDW 155
            E + SPS  PL S+ P I H LS       + P   +W
Sbjct: 921  EDVTSPSIEPLPSSSPRIRHSLSQMLQADSNEPEIIEW 958


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,830,137
Number of Sequences: 37544
Number of extensions: 145392
Number of successful extensions: 276
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)