Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0320
         (307 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.004
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.046
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)                  27   2.3  
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.0  
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             26   5.3  
SB_37661| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_28771| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)            25   9.2  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  

>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 16/24 (66%), Positives = 17/24 (70%)
 Frame = -1

Query: 253 PSGFPLTST*PGIVHHLSGPSICA 182
           P  FPL S   GIVHHLSGP+ CA
Sbjct: 6   PPEFPLASPYSGIVHHLSGPNRCA 29


>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = -3

Query: 254 SIRVSPDFDLTRHSSPPFGSQHLCS 180
           S RVS  F L RHSSP FGSQ + S
Sbjct: 40  STRVSSGFTLFRHSSPSFGSQQMRS 64


>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
          Length = 307

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 214 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 122
           V  L+  S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213


>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/34 (50%), Positives = 17/34 (50%)
 Frame = -3

Query: 305 PLYPVPTIDLHVRIATVSIRVSPDFDLTRHSSPP 204
           PLYP  TIDLHVR    S   SP   L     PP
Sbjct: 42  PLYPNLTIDLHVR----SNSCSPGDPLVLERPPP 71


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 169  KARSEHKCWDPKGGELC 219
            K R E  CW  KGG+ C
Sbjct: 1105 KLRKEQDCWPCKGGKYC 1121


>SB_37661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 169 KARSEHKCWDPKGGEL 216
           KARS H C+DP G  L
Sbjct: 144 KARSTHDCFDPAGDPL 159


>SB_28771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 222 GQVEVRGNPDGDRSDSDVQIDRRN 293
           G  +V G  DGD  D D ++D +N
Sbjct: 59  GDGDVDGGGDGDDDDDDDEVDAKN 82


>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
          Length = 703

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 202 KGGELCLVRSKSGETLMETVAILTCKSIVGTG 297
           +GGE     +KS +T     ++ +C+S++ TG
Sbjct: 314 EGGESFSTTAKSKDTKANDYSMTSCRSVLATG 345


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 72   RRTLDVRSGRMK-LSSYVRDFRTPEASRFQS 161
            +RTLD R    + L SY+RD +TP  S  ++
Sbjct: 1416 QRTLDSRGNITQILRSYIRDTQTPSYSTLEA 1446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,017,321
Number of Sequences: 59808
Number of extensions: 166699
Number of successful extensions: 340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)