Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0320
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical ...    27   3.4  
AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical ...    26   4.5  
AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical ...    26   6.0  
AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical...    25   7.9  

>U00040-3|AAM22033.1|  638|Caenorhabditis elegans Hypothetical
           protein C18H2.3 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -3

Query: 278 LHVRIATVSIRVSPDFDLTRHSSPPFGSQHLCSERAFIH*LETRRLGSAKITN 120
           LH  +  + I     FDLT++ + P     L +E  F+H +  R +   K  N
Sbjct: 578 LHAHLGPLFIIHDGSFDLTKYKNDPDKMYTLLTEEEFMHFMLKREINVDKRPN 630


>Z68117-1|CAA92181.2|  459|Caenorhabditis elegans Hypothetical
           protein F45E6.3 protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 53  KGVTKVKANARRSLREDEIIELRS*FSHSRGVSFPIS 163
           K ++++  + RR   E +  +L S F H  G+ +P+S
Sbjct: 116 KVLSQIDKDVRRLYPEIQFFQLLSRFPHQHGMKYPLS 152


>AF068716-7|AAC17746.1|  384|Caenorhabditis elegans Hypothetical
           protein F26D11.2 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 87  VRSGRMKLSSY-VRDFRTPEASRFQSVN 167
           ++S R++ + Y VR F  PE +RF S+N
Sbjct: 327 IKSFRVETADYTVRAFADPEKTRFSSIN 354


>AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical
           protein Y44E3B.2 protein.
          Length = 392

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 160 Q*MKARSEHKCWDPKGGELCLVRSKSGETLMETVAILTCKSIVGTGY 300
           Q M++R E K   PK  E C     +G+  M  +  L  K  +  GY
Sbjct: 253 QNMQSREERKTEYPKSDERCFPFWHNGDNSMPLLQPLKNKDALSNGY 299


>AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical
           protein C24G6.2a protein.
          Length = 903

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 296 PVPTIDLHVRIATVSIRVSPD 234
           PVP  D+HV+ +T+S  +  D
Sbjct: 242 PVPDFDVHVKNSTISTSIGSD 262


>AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical
           protein Y71G12B.25 protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -1

Query: 217 IVHHLSGPSICAQSAPSFTDWKRDASGVRKSRT*LDNFILPERTSSVRLHFRYAFQF 47
           ++  L    I   SA   TD  + A+G+      L +FILP   S +  H  Y F F
Sbjct: 355 LLFDLKNCQIHENSAVELTDLGK-ATGLASMVQWLTHFILPIYASQLVEHLHYTFAF 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,598,839
Number of Sequences: 27780
Number of extensions: 121920
Number of successful extensions: 228
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)