Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0320
         (307 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-...    28   1.4  
At3g07550.2 68416.m00902 F-box family protein (FBL12) contains s...    26   4.3  
At3g07550.1 68416.m00901 F-box family protein (FBL12) contains s...    26   4.3  
At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identic...    26   5.7  
At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) fa...    25   7.6  

>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 649

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 230 DLTRHSSPPFGSQHLCSERAF 168
           DL +HS+PP  S HL SE  F
Sbjct: 205 DLMQHSAPPLPSLHLPSESQF 225


>At3g07550.2 68416.m00902 F-box family protein (FBL12) contains
           similarity to F-box protein FBL6 GI:6456737 from [Homo
           sapiens]
          Length = 395

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 250 METVAILTCKSIVGTGYRG 306
           +E+V I  CKSI G G+ G
Sbjct: 196 LESVKISNCKSITGVGFSG 214


>At3g07550.1 68416.m00901 F-box family protein (FBL12) contains
           similarity to F-box protein FBL6 GI:6456737 from [Homo
           sapiens]
          Length = 395

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 250 METVAILTCKSIVGTGYRG 306
           +E+V I  CKSI G G+ G
Sbjct: 196 LESVKISNCKSITGVGFSG 214


>At5g24850.1 68418.m02938 cryptochrome dash (CRYD) nearly identical
           to cryptochrome dash [Arabidopsis thaliana] GI:28971609;
           similar to Deoxyribodipyrimidine photolyase (DNA
           photolyase) (Photoreactivating
           enzyme)(SP:Q55081){Synechocystis sp.}
          Length = 526

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 301 YTQFRRSICTSESLRSPSGFPLT 233
           YTQFR+S+    S+RS +  PL+
Sbjct: 195 YTQFRKSVEAKCSIRSSTRIPLS 217


>At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 217 CLVRSKSGETLMETVAILTCKSIVG 291
           C    KSG      VA+L C SI+G
Sbjct: 520 CFGAKKSGHLSRAVVAVLICLSIIG 544


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,238,378
Number of Sequences: 28952
Number of extensions: 113352
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)