Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0318
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    28   1.2  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.6  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    27   2.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   8.3  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   8.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.3  

>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +2

Query: 29  QSKTLYTKGSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PP 199
           +S  L+  GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP
Sbjct: 121 RSHALFMVGSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPP 180

Query: 200 QSNSPPGSVLE 232
            +  PP SV+E
Sbjct: 181 STAKPPASVIE 191


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 193 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 59
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 420 YATPLMSPYNARLESSSTGSSFPADSPKPVPWL 518
           Y  P+ SPY++    SST SSF   SP   PWL
Sbjct: 132 YKKPV-SPYSSSSAVSSTSSSFDRTSP---PWL 160


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
 Frame = +2

Query: 179 SLTDVPPQSNSPPGSVLEPD-----HAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPL 343
           S+T   P   SP    +EP      HAG L  TSVS      T+    +   D  D    
Sbjct: 587 SITPADPVPTSPKPLAIEPVKRKPVHAGNLEVTSVSDNKLGATVQVVEQKVDDKADALTK 646

Query: 344 PPN 352
           PP+
Sbjct: 647 PPS 649


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 76   SPYAY*TSGSSQLLPFCSTRGF 141
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 545 VPIYYLAKPQPRDGLGRIS 489
           VP+Y ++ P P+D L +++
Sbjct: 231 VPVYSVSSPSPKDSLSKVT 249


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 602 GYLKRVIVTPAVYPRLLEFLHVDIQST 682
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,874
Number of Sequences: 5004
Number of extensions: 61839
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)