Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0318
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 34 0.100
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 2.2
01_01_0613 - 4571689-4572348 30 2.2
08_02_1609 - 28213071-28213796 29 5.0
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.0
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 28 6.6
07_03_1623 - 28196981-28197532,28197667-28198058,28198472-281986... 28 6.6
07_01_0013 - 99952-100413,100534-100704 28 6.6
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 28 6.6
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605... 28 6.6
05_03_0458 + 14280953-14281866,14281964-14282912 28 8.7
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 34.3 bits (75), Expect = 0.100
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +2
Query: 110 SFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLTATSVSATSPLC 289
+F P+ P LA + GH R+ + D + S G + D + + +VSA + LC
Sbjct: 371 AFHPYLP-----LATTSSGHRRFGMEDEIEEELSLAGIFNKGDRSYAVRRAAVSAYAALC 425
Query: 290 TLGTKHRAPADIIDR 334
+ H AP + DR
Sbjct: 426 AVLCAHEAPGGLPDR 440
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 584 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 685
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>01_01_0613 - 4571689-4572348
Length = 219
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 155 LALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIID 331
L LGH YSL PP S + D GV +++S +AT+ +G + R+ +++D
Sbjct: 51 LELGHSVYSLPLPPPPSQPVVVAGGNNDQYGVSSSSSAAATT--SRIGFRTRSEVEVLD 107
>08_02_1609 - 28213071-28213796
Length = 241
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 575 AHEWINEIPTVPIYYLAKPQPRDGLG 498
+H+ P +P ++LA QPR GLG
Sbjct: 45 SHQTARPTPPLPSFFLAADQPRRGLG 70
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 280 TTLHAWNETPCARRYY 327
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 569 EWINEIPTVPIYYLAKPQPRDGLGRI 492
EWI++I P+YY K + D +G I
Sbjct: 269 EWIDKIEECPVYYPTKEEFEDPIGYI 294
>07_03_1623 -
28196981-28197532,28197667-28198058,28198472-28198661,
28198773-28198972,28199733-28199838
Length = 479
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 526 RNHSQGTGLGESAGKEDPVELDSSLAL 446
++HS+G G G S+G+ D +++ LAL
Sbjct: 417 QDHSEGYGSGSSSGRNDGLDVPELLAL 443
>07_01_0013 - 99952-100413,100534-100704
Length = 210
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 233 PDHAGVLT-ATSVSATSPLCTLGTKHRAPADIIDRAP 340
P H G LT A SV TS L T GT H+A A +D+ P
Sbjct: 155 PSHVGYLTLAKSVVETSDLAT-GTLHQATA-ALDQQP 189
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 608 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRD 507
G+ PR + D EW N PT+ ++ + +PR+
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPRE 1426
>01_06_1105 -
34559694-34559852,34560298-34560312,34560451-34560522,
34560695-34561549
Length = 366
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 191 VPPQSNSPPGSVLEPDHA-GVLTATSVSATSPLCTLGTKHRAPADIIDR 334
VP N PG++LEP ++ G ++ + S T G K D+ D+
Sbjct: 213 VPQPLNVGPGAILEPSYSDGQTSSGMIGGMSDSQTPGRKRGMSGDVADK 261
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = +2
Query: 194 PPQSNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVS 361
PP SNS P S P LT TS ++SP P PLPP +S
Sbjct: 33 PPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPLQPTP----PPLPPTTLS 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,780,003
Number of Sequences: 37544
Number of extensions: 458704
Number of successful extensions: 1410
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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