Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0318
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    32   0.45 
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.59 
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.1  
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ...    29   3.1  
At2g47390.1 68415.m05915 expressed protein                             29   3.1  
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    29   4.1  
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si...    29   4.1  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   7.2  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   7.2  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    27   9.6  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    27   9.6  
At3g62370.1 68416.m07006 expressed protein                             27   9.6  
At3g54930.1 68416.m06087 serine/threonine protein phosphatase 2A...    27   9.6  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   9.6  

>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 179 SLTDVPPQSNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 358
           S T  PP S +PPG    P  +  ++     ATSP  ++  K  +P       P PP   
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSSSAVS----PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224

Query: 359 S 361
           S
Sbjct: 225 S 225


>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 251 LTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYT 430
           L    V   S    LG +H  PA +I+R P PP  +S   +++++F     E    +CY 
Sbjct: 217 LDTEDVLLVSAKTGLGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYV 274

Query: 431 SHV 439
           S V
Sbjct: 275 SVV 277


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 154 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 41
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 499

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 26/87 (29%), Positives = 39/87 (44%)
 Frame = +2

Query: 203 SNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVV 382
           S++ P  VL  DH  V  +T V    PL  +   + +P +    AP P NR   ET + +
Sbjct: 37  SSTNPNRVL--DHISVSESTDV----PLIIIKNSNSSPQN---NAPKPQNREGAETEEPI 87

Query: 383 VFQRRSRETISHLCYTSHVSLQCQTRV 463
              R   +T S +      +L+C  RV
Sbjct: 88  KENRGGTKTESSMNQNRGETLRCIQRV 114


>At2g47390.1 68415.m05915 expressed protein
          Length = 961

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 245 GVLTATSVSATSPLCTLGTKHRAPA----DIIDRAPLPPNRVSNETMKVVVFQRRSRETI 412
           G L+A++ +       +GT +R P     DI+D  P+P    S    K++  +RR+   +
Sbjct: 90  GSLSASATATEDDELAIGTGYRLPPPEIRDIVDAPPVPALSFSPHRDKILFLKRRALPPL 149

Query: 413 SHL 421
           + L
Sbjct: 150 ADL 152


>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 23  FHQSKTLYTKGSIG-RAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 190
           FH    L+T  S+  + F    +   +DQA  C   P + S   E+   H R  +TD
Sbjct: 61  FHILVLLFTTWSVDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117


>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]
          Length = 429

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 251 LTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 379
           LTA +   T+   T+G  +  PA I     L P+R++ + + +
Sbjct: 17  LTAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 329 DRAPLPPNRVSNETMKVVVFQRRSRET 409
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 278 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 415
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 338 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 448
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 338 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 448
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 244 GSFNGDERFRHVTTLHAWN 300
           G  NG +RF H+  ++AWN
Sbjct: 175 GEGNGGDRFGHLVDIYAWN 193


>At3g54930.1 68416.m06087 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 497

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 14  QRCFHQSKTLYTKGSIGRAFAVPMRTEH 97
           +RC    + L   GS+   F VPMR EH
Sbjct: 271 ERCIGIGELLEILGSVINGFTVPMREEH 298


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 290  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 385
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,649
Number of Sequences: 28952
Number of extensions: 343832
Number of successful extensions: 1036
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)