Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0317
         (770 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.2  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   6.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   6.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.2  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 166 KYYFIIYYNQFILYLKN 216
           KYY I+Y+ + ++YL +
Sbjct: 328 KYYNILYFCRIMVYLNS 344


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 584 RSASHVLPIFATKHSCVRFKSRISDHQHNSEFNLMS 477
           R +S +LPI+         +  IS+H   S+ N++S
Sbjct: 53  RISSLILPIYGLSTKPKIMQGAISNHIQGSKPNILS 88


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 426 ATRIWRCKNVNAAPSALRHE 485
           A R+ +C+NV     A++HE
Sbjct: 94  ACRLKKCQNVGMNKDAVQHE 113


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 426 ATRIWRCKNVNAAPSALRHE 485
           A R+ +C+NV     A++HE
Sbjct: 94  ACRLKKCQNVGMNKDAVQHE 113


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 148 EIKT*PKYYFIIYYNQFILYLKNR*RIKSNCFKKARELAT 267
           E K+  K+Y  +   +  L L+N  R+ SN   K   +AT
Sbjct: 130 EEKSSTKHYAALLTERSSLVLRNDFRLMSNNLNKNNVVAT 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,890
Number of Sequences: 336
Number of extensions: 3247
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)