Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0314
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 27 0.94
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 27 1.2
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.2
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 2.9
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 26 2.9
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 5.0
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 5.0
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 6.7
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 6.7
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 24 8.8
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom... 24 8.8
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 24 8.8
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 24 8.8
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 27.5 bits (58), Expect = 0.94
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 364 PDPSLYGRGPSTKNASDHTFLF 429
P+P+L P+T+ AS++T+L+
Sbjct: 174 PEPALLPEAPNTREASNNTYLY 195
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 27.1 bits (57), Expect = 1.2
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +3
Query: 33 PYRTLSSALLYMQRTKQLFS----SRSYQNDQINKQTEQMYHLLAICLVLHPQCVDESIQ 200
P R +S L + FS S + D+ +Q +Q Y+ +CL H + V+++
Sbjct: 284 PVRVVSIRSLPSGEASESFSEKQASEAEHKDEPEQQRKQFYNF-ELCLAYHAKPVEDATS 342
Query: 201 QVLREKNYH 227
R N H
Sbjct: 343 TSARASNLH 351
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 172 IRSALMNPSS-RCFEKRTTMRRCLKCNMEPR*IRELLYFRVPQILIGVSPAH 324
IR +NP+ R F MRR K + +L+Y P + SP H
Sbjct: 358 IRRPRLNPNFFRVFVLEAQMRRAGKLSANTAGRAQLIYLPKPAVTFSTSPLH 409
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 25.8 bits (54), Expect = 2.9
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +3
Query: 27 PTPYRTLSSALLYMQR----TKQLFSSRSYQNDQINKQTEQMYHLLAICLVLHPQCVDES 194
PTP + SSA L + K+L QIN + LL + + HPQ +DE
Sbjct: 143 PTPIQLASSASLLKKVESFIAKELLLFEYLDGHQINFIQIFLMGLLRVQNIQHPQTIDEL 202
Query: 195 IQQVLREKN 221
+ + E++
Sbjct: 203 AEFIGHEES 211
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 54 ALLYMQRTKQLFSSRSYQNDQINKQT 131
ALLY++R +L + ++N ++ KQT
Sbjct: 663 ALLYLKRILELEETTDFKNQEVFKQT 688
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 5.0
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 27 PTPYRTLSSALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAICLVLHPQCVDESIQQV 206
P P S+ L +T+ + S +ND + TE L +I L + D+ + +V
Sbjct: 318 PKPLSRSKSSSLSRNQTRSQLNDLSAENDSTSNSTEYDDQLQSILRSLAIEGDDDEVAKV 377
Query: 207 L 209
L
Sbjct: 378 L 378
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 5.0
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = +3
Query: 42 TLSSALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAICLVLHPQCVDESIQQVLREKN 221
TL + L + T + ++QN Q+ K Q+ + L HPQ ++ S+ + +
Sbjct: 502 TLDAWLTRLFETSFAIKASAFQNPQLLKTCSQLLSSCSCFLQNHPQYLNISLPVLFDALH 561
Query: 222 YHEKMFKM 245
E +M
Sbjct: 562 ISETSIQM 569
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 374 VFMDEVRQQKMLPTIRSYL 430
+F +E+R Q +LPT+ SY+
Sbjct: 449 IFNEELRIQTLLPTMLSYM 467
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 72 RTKQLFSSRSYQNDQINKQTEQMYHLLAICLVLHPQCVDESIQQVLREKNY 224
+T+ L S N +KQT +L + P C+DE+ ++ ++ Y
Sbjct: 501 KTEFLIQWSSLTNAAPDKQTGHSPRVLVLAATNLPWCIDEAARRRFVKRTY 551
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 6.7
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +3
Query: 27 PTPYRTLSSALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAICLVLHPQCVDESIQQV 206
P P S+ + MQR + RSYQ + N + Q ++ + L L + + +
Sbjct: 433 PNPISMPSNLIETMQRILRGMELRSYQPGKYNNPSLQWHYKVLQALALDEEIPTDFVDNT 492
Query: 207 L 209
L
Sbjct: 493 L 493
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = -2
Query: 220 FFSRSTCWMDSSTHCGCKTKQMASKWYICSVCLL 119
F S CW + H GC+T M + C++
Sbjct: 303 FDSLLGCWPSPTRHVGCRTFFMVTVSRFLPTCVI 336
>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 8.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 22 VRRRHTAPSLLRCYTCNALNNCSPPVPTRMIRSTNRP 132
+RR S + C L SP R+++S+NRP
Sbjct: 57 IRRLKKEKSSMSCSELAKLYGVSPESIRRILKSSNRP 93
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 24.2 bits (50), Expect = 8.8
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -1
Query: 260 LGSILHFKHLLMVVLFSKH--LLDGFINALRMQDQTNGQ*MVHLLGLF-VDLIILVGTGG 90
L S HF LL++VLF H L R+Q++ N + + +DL IL
Sbjct: 193 LHSTAHFVSLLLIVLFLTHFRLRKAEREKRRLQNERNRERNAQRVSASKLDLAILEAAEV 252
Query: 89 EQLFSALHV*QRRREGAV 36
E++ S + ++ E ++
Sbjct: 253 EEINSTTEIEEKVDEASL 270
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 109 MIRSTNRPSKCTIYWPFVWSCIRSALMN 192
+I T + T++ FVWS SAL+N
Sbjct: 432 IILDTIKKQSRTVHITFVWSARSSALLN 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,041
Number of Sequences: 5004
Number of extensions: 43937
Number of successful extensions: 129
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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