Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0314
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 64 4e-11
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 61 3e-10
11_02_0077 - 8073139-8073168,8073419-8073751 27 5.0
06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977... 27 6.6
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379... 27 6.6
01_06_1553 + 38214404-38214497,38214860-38214993 27 6.6
01_06_1473 - 37619415-37619561,37619649-37619723,37619800-376199... 27 6.6
11_01_0056 + 427376-427408,427589-427694,427777-427823,427907-42... 27 8.7
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 64.5 bits (150), Expect = 4e-11
Identities = 28/57 (49%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 FESCFTFACPKFLSACPPPI-EPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLK 433
++ F++ACPKF++A PP + EP NY +DA + Q ++F+ EV+QQ++L IRSYLK
Sbjct: 354 YDELFSYACPKFITASPPVLREPYTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLK 410
Score = 56.0 bits (129), Expect = 1e-08
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +3
Query: 39 RTLSSALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAICLVLHPQ--CVDESIQQVLR 212
R + LLY+ + KQ + S Q DQ+ K+ EQMY LLAICL L PQ +DE++ L+
Sbjct: 275 REFNKILLYILKCKQ-YHQNSPQYDQLLKKNEQMYALLAICLSLCPQDKLIDENVGTQLK 333
Query: 213 EKNYHEKMFKM 245
EK Y +KM KM
Sbjct: 334 EK-YGDKMTKM 343
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 61.3 bits (142), Expect = 3e-10
Identities = 26/57 (45%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 FESCFTFACPKFLSACPPPIE-PGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLK 433
++ F++ACPKF++ PP ++ P NY +DA + Q ++F+ EV+QQ++L IRSYLK
Sbjct: 374 YDELFSYACPKFITPSPPALDQPLTNYNQDAYRLQLKLFLYEVKQQQLLSGIRSYLK 430
Score = 59.3 bits (137), Expect = 1e-09
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Frame = +3
Query: 39 RTLSSALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAICLVLHPQ--CVDESIQQVLR 212
R + LLY+ + KQ + +S Q DQI K+ EQMY LA+CL L PQ +DE++ L+
Sbjct: 295 REFNKILLYILKYKQ-YHQKSPQYDQILKKNEQMYAFLAVCLSLCPQHNLIDENVSTQLK 353
Query: 213 EKNYHEKMFKMQ 248
EK Y++KM KMQ
Sbjct: 354 EK-YNDKMTKMQ 364
>11_02_0077 - 8073139-8073168,8073419-8073751
Length = 120
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 356 QHHGHSWHRVQWAGDTPIRIWGTRK 282
QHH SW R++W RIW R+
Sbjct: 3 QHHRRSWPRIRWV--KGCRIWWLRE 25
>06_02_0136 +
12195422-12195435,12196047-12196122,12196896-12197707,
12197941-12198010,12199469-12199557,12199633-12199666
Length = 364
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +1
Query: 100 PTRMIRSTNRPSKCTIYWPFVWSCIRSALMNPSSRCFEKRTTMRRCLKCNMEPR*IRELL 279
PT R S+C PF SCIR+ N + + + +R C C R+L
Sbjct: 223 PTAAERKFGLLSECD--HPFCISCIRNWRNNSPTSGMDVNSALRACPIC-------RKLS 273
Query: 280 YFRVPQIL 303
Y+ +P +L
Sbjct: 274 YYVIPSVL 281
>02_01_0524 +
3798019-3798265,3798419-3798651,3798765-3799014,
3799104-3799249,3799372-3799577,3799721-3799845,
3800154-3800734
Length = 595
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 341 YGRDAVKHQTQVFMDEVRQQKMLPTIRSYL 430
YGR + + +E++Q+ M PT++S++
Sbjct: 395 YGRAGLHEDAEAVFEELKQRGMSPTMKSHM 424
>01_06_1553 + 38214404-38214497,38214860-38214993
Length = 75
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = -1
Query: 365 GV*QHHGHS---WHRVQWAGDTPIRIWGT 288
G+ +H G S W +W G T I++WGT
Sbjct: 7 GLKEHSGTSAWRWWPRRWIGATMIQVWGT 35
>01_06_1473 - 37619415-37619561,37619649-37619723,37619800-37619919,
37620074-37620127,37620204-37620426,37620506-37620585,
37620675-37620764,37620847-37620960,37621192-37621272,
37621383-37621490,37621677-37621722,37621802-37621899,
37621975-37622148,37622456-37622548,37623229-37623285,
37623399-37623438,37623567-37623685,37624179-37624298,
37624723-37624815,37624940-37625251,37625325-37625444,
37625545-37625658,37625731-37625910,37625996-37626110,
37626195-37626358,37626584-37626769,37626888-37626978,
37627089-37627153,37627223-37627297,37627410-37627493,
37627575-37627742,37628160-37629293
Length = 1579
Score = 27.1 bits (57), Expect = 6.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 4 VHDDASVRRRHTAPSLLRCYTCNALNNCSPPVPTRMIRSTN 126
V DD R R P L C +C+ +C PPV + +I S++
Sbjct: 1367 VIDDEDERYRGCEPLRLSCPSCSTTFDC-PPVSSLIIGSSS 1406
>11_01_0056 +
427376-427408,427589-427694,427777-427823,427907-428065,
429018-429092,429379-429973,430529-430943,431105-431118,
431476-431591
Length = 519
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 109 FW*EREENNCLVRCMYSSAE-ERVRYGVG 26
FW R + NCL C+ S+ ER+R +G
Sbjct: 293 FWDPRRQFNCLQTCVASAKHTERIRCALG 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,363,560
Number of Sequences: 37544
Number of extensions: 328710
Number of successful extensions: 968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -