Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0314
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 5e-09
SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045) 32 0.23
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 2.2
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027) 28 2.9
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012) 28 2.9
SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3) 28 3.8
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_43067| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_55019| Best HMM Match : YibE_F (HMM E-Value=0.85) 27 5.0
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 27 5.0
SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015) 27 8.8
SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 27 8.8
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 27 8.8
SB_31561| Best HMM Match : GMP_PDE_delta (HMM E-Value=2.4e-06) 27 8.8
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 57.2 bits (132), Expect = 5e-09
Identities = 26/47 (55%), Positives = 35/47 (74%)
Frame = +3
Query: 39 RTLSSALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAICLVLHPQ 179
R SS LLY+QRTK + ++SYQ ++I K+ +QMY+LLAI L L PQ
Sbjct: 91 RCFSSVLLYIQRTKNMLQTKSYQYEEIMKKNDQMYNLLAIALTLCPQ 137
Score = 37.1 bits (82), Expect = 0.006
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 365 QTQVFMDEVRQQKMLPTIRSYLK 433
Q +VFM+EV QQ M+P IRSYLK
Sbjct: 143 QLKVFMNEVAQQSMIPVIRSYLK 165
>SB_36834| Best HMM Match : Rap_GAP (HMM E-Value=0.00045)
Length = 545
Score = 31.9 bits (69), Expect = 0.23
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 13 DASVRRRHTAPSLLRCYTCNALNNCSPPVPTRMIRSTNRPSKCTIY 150
D ++ R PSL+R NA N+CSP P + R R S + Y
Sbjct: 232 DGAIVNRRVLPSLVRATAINASNSCSPGDPLVLERPPPRWSSNSPY 277
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 210 REKNYHEKMFKMQYGT*VNSRAALLSRAPNSYRRVPRPLNPVPTMAVMLSNT--RPKS 377
RE+ Y +K + + + VNS +++ SR + Y VP+P ++ + T RPKS
Sbjct: 1504 REQTY-DKNARNGFSSDVNSASSITSRKIDPYPTVPKPAKDSAVVSSVYKRTGARPKS 1560
>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
Length = 442
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 43 PSLLRCYTCNALNNCSPPVPTRMIRSTNRPSKCTIY 150
P +L AL C+ +PTR ST++P C ++
Sbjct: 2 PCVLAALVLIALTPCTSIIPTRADDSTDQPIHCNVH 37
>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
Length = 489
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 43 PSLLRCYTCNALNNCSPPVPTRMIRSTNRPSKCTIY 150
P +L AL C+ +PTR ST++P C ++
Sbjct: 2 PCVLAALVLIALTPCTSIIPTRADDSTDQPIHCNVH 37
>SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3)
Length = 682
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 263 EFESCFTFACPKFLSACPPPIEPGANYGRDAVKHQTQVFMDEVRQQKMLPTIRSYLK 433
E S + + P F CP E N D + Q Q+ +DE +L TI YLK
Sbjct: 144 EILSIQSSSAPLFQGHCPSNCEQKKNLENDTLTDQAQINIDE-----LLETIGFYLK 195
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 28 RRHTAPSLLRCYTCNALNNCSPPVPTRMIRSTNRPSK 138
RR P RCY C + S P M+ RP K
Sbjct: 97 RRRDYPDKSRCYECGEGGHLSYECPKNMLGERERPPK 133
>SB_43067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 106 RMIRSTNRPSKCTIYWPFVWSCIRSA 183
R+IRSTNRP + PF C ++A
Sbjct: 90 RIIRSTNRPLALLVKQPFSKRCTKAA 115
>SB_55019| Best HMM Match : YibE_F (HMM E-Value=0.85)
Length = 329
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +2
Query: 275 CFTF-ACPKFLSACPPPI-EPGANYGRDAVKHQTQ 373
C TF + P F ACPP + EPGA V+ Q
Sbjct: 280 CGTFHSAPAFTRACPPRLEEPGARCSSACVQSSRQ 314
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 45 LSSALLYMQRTKQLFSSRSYQNDQINKQTEQMYHLLAICLVLHPQCVDESI 197
L++ + +R K+ +SR ++ + ++TE+ + +C V+H Q D I
Sbjct: 754 LNAEAIEAEREKEKKASRRVKDTKKEEETEEELAAIKVCHVVHDQIKDFKI 804
>SB_59380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1226
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -3
Query: 291 HAKVKQLSNSPRFHIAF*TSSHGSSFLEAPAGWIHQ----RTADARPNKWPVNGTFA 133
H K+K LS ++H+ +++L A + W+H +T + RP P N FA
Sbjct: 817 HVKIKDLSPGRKYHVM--VKPLDANYL-AMSDWVHSSSSCQTPEQRPGSPPRNFKFA 870
>SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)
Length = 858
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 44 PLFCAAIHATH*TIVLLPFLP 106
PLFC + T I++LPF+P
Sbjct: 273 PLFCFPVIVTSLAIIVLPFVP 293
>SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = -3
Query: 330 GSMGGGHADKNLGHAK---VKQLSNSPRFHIAF*TSSHGSSFLEAPAGWIHQRTAD 172
G + G A NL ++K V L S R TS+ + +E AGWIH T++
Sbjct: 12 GGIAGLSAALNLQNSKEVDVTILEASSRIGGRIHTSTINNEVVELGAGWIHDSTSN 67
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 156 ICLVLHPQCVDESIQQVLRE--KNYHEKMFKMQYGT*VNSRAALLSRAPNSYRRV 314
ICL LH C +E +Q E K EK+ K + N R + S++R+
Sbjct: 1333 ICLTLHLPCREEERRQKREEARKRREEKLAKKESSKSSNKRKSKERSGNPSFKRI 1387
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +1
Query: 43 PSLLRCYTCNALNNCSPPVPTRMIRSTNRPSKCTIYWPFVWSCIRSALMNPSSRC 207
PS LR L P+P R R P + PFV C+R P S C
Sbjct: 362 PSPLRRLAAFCLYALGRPLPIRPSRPLRPPRPSALCTPFVAPCLR--FYGPCSIC 414
>SB_31561| Best HMM Match : GMP_PDE_delta (HMM E-Value=2.4e-06)
Length = 129
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +1
Query: 22 VRRRHTAPSLLRCYTCNALNN--CSPPVPTRMIRSTNRPSKCTIYWPFVWSCIRSALM 189
VR + T P L+ T A +N C+ + ++NR +C + WP V + + S+ +
Sbjct: 55 VRYKFT-PEFLKLKTVGATSNLACTIVANRGKVITSNRMRQCFLAWPVVEAVVASSFV 111
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 314 PPPIEPGANYGRDAVKHQTQVFMDEVRQQKMLPTIR 421
PPP+ PG Y V F++E R + ++P +R
Sbjct: 2112 PPPLPPGDGYEFQGVPPPPMEFVEE-RMKPLVPPLR 2146
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,036,041
Number of Sequences: 59808
Number of extensions: 355840
Number of successful extensions: 869
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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