Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0314
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   4.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.9  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   7.9  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   7.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.9  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 51  SALLYMQRTKQLFSSRSYQNDQINKQTEQM 140
           S+L  ++  K ++  +  +N+Q  K+ EQM
Sbjct: 43  SSLNSLRNHKSIYHRQHSKNEQQRKEMEQM 72


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2
          protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 1  RVHDDASVRRRHTAPSLLRC 60
          R+HD+ S+R      S  RC
Sbjct: 32 RLHDNPSLREGLAGASTFRC 51


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/28 (21%), Positives = 15/28 (53%)
 Frame = +2

Query: 326 EPGANYGRDAVKHQTQVFMDEVRQQKML 409
           + G N+    V+   ++++DE    K++
Sbjct: 74  DDGGNFNEVVVREIAEIYLDENEVNKLI 101


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/28 (21%), Positives = 15/28 (53%)
 Frame = +2

Query: 326 EPGANYGRDAVKHQTQVFMDEVRQQKML 409
           + G N+    ++   ++F+DE    K++
Sbjct: 74  DDGGNFNEVVIREIAEIFLDENGVNKLI 101


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 85  NCLVRCMYSSAEERVRYGVGV 23
           NC    +Y S+ + +  GVGV
Sbjct: 216 NCTYVALYPSSVQVIALGVGV 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,992
Number of Sequences: 438
Number of extensions: 3463
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)