Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0313
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    29   0.27 
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    27   1.5  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   3.4  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   4.5  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    25   4.5  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   5.9  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    24   7.8  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    24   7.8  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    24   7.8  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 20  PVYPTPATRLITTPGPGSVQQLVTFYNSQ 106
           P  PTP++ LI TP PG++     F  SQ
Sbjct: 168 PCIPTPSSALIDTPFPGALDSEFGFDESQ 196


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 92  FYNSQGKGSVIKPYSYSDAVKQG*TFNENIKDLICLLRKYC 214
           +Y  + +  V+K   + + VK     N + KD +C++  YC
Sbjct: 115 YYYIRKELDVLKVLDHENVVKLYQVINSDYKDSLCMVLNYC 155


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 5   QIKPVPVYPTPATRLITTPGPGS 73
           ++KP    PTPA  + T+P P S
Sbjct: 322 EVKPAAPVPTPAPPVKTSPHPAS 344


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 16  CASVPYSSDAAHHHPRTWKRAAARHFLQ*PGQRKC 120
           C  +P+ +DAA  HP   + A  R  L  P   KC
Sbjct: 385 CILIPHINDAASDHPAWPQDAFNRVALGLPSNFKC 419


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 172 VKCLTLLYGIAVTVRFDYTSFALAIVESDE 83
           ++CL L+   A  V  ++T   LA  +SDE
Sbjct: 48  LRCLNLMNAAARVVMSEFTDIVLAYGDSDE 77


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 29  PTPATRLITTPGPGSVQQLVTFYNSQGKGSVIKPY 133
           P P   L T+P P S+ Q   F  SQ  G   + Y
Sbjct: 70  PQPCAVLYTSPSPSSISQAGPFAISQVFGPAGRLY 104


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 84 SCCTLPGPGVVMSR 43
          S CTLPGPG ++ +
Sbjct: 26 SICTLPGPGSLLKK 39


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 133 VRFDYTSFALAIVESDELLHAS 68
           + +D+ SF L++ E+D LL  S
Sbjct: 132 IAYDFVSFELSVYETDALLKNS 153


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 14  PVPVYPTPATRLITTP 61
           P PV P PA   +TTP
Sbjct: 367 PPPVMPQPAAAAVTTP 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,534,735
Number of Sequences: 5004
Number of extensions: 27812
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)