Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0313
         (404 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0204 - 15565684-15566223,15567272-15567678,15568143-155684...    29   1.1  
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023     29   1.4  
02_05_0860 - 32296743-32296769,32297328-32297357,32298432-322985...    28   3.2  
06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669           27   5.6  
12_02_1176 + 26705994-26707175                                         27   7.5  
09_04_0199 - 15533619-15534107,15534956-15535362,15535559-155358...    27   7.5  
04_04_1672 - 35242468-35243235,35243481-35243645                       27   7.5  
10_06_0140 + 11147019-11147791,11148301-11150524                       26   9.9  
03_02_0314 + 7398247-7400877                                           26   9.9  
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608...    26   9.9  

>09_04_0204 -
           15565684-15566223,15567272-15567678,15568143-15568446,
           15568735-15570065,15570769-15570846,15570943-15571027
          Length = 914

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 127 FDYTSFALAIVESDELLHASRSWGGDE 47
           +D++   L+I+E D ++H  + W GD+
Sbjct: 745 YDFSREILSILEGDSIIHIEKKWIGDQ 771


>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
          Length = 620

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 13  ACASVPYSSDAAHHHPRTWKRAAA 84
           ACASV   S   HHH R    AAA
Sbjct: 545 ACASVALKSSGCHHHVRAGAAAAA 568


>02_05_0860 -
           32296743-32296769,32297328-32297357,32298432-32298503,
           32298967-32299812
          Length = 324

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 8   IKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQGKGSVIKPYSYSDAVKQG 160
           + PVP  PTP    +  P P   Q  + F  S     ++ P S  + +  G
Sbjct: 150 VPPVPPAPTPTAAAVPPPPPPQQQTPMLFGQSNVFPPMVPPLSLGNGLVSG 200


>06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669
          Length = 387

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 127 FDYTSFALAIVESDELLHASRSWGGDEPRRWSRVHW 20
           FD     + ++ SD +  A R    D P RW  +HW
Sbjct: 110 FDAYGLPVRLLVSDPMTGAERLL--DAPERWRNIHW 143


>12_02_1176 + 26705994-26707175
          Length = 393

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 15  LCQCTLLQRRGSSPPQDLEACSSSSLSTIARAKEV*SNRTVTAM 146
           +C C +  R G+ PP+  E     S+S+ +R+K      T+T M
Sbjct: 276 VCACQVASRGGARPPEYRETLDYDSVSS-SRSKNRRQRATLTYM 318


>09_04_0199 -
           15533619-15534107,15534956-15535362,15535559-15535862,
           15537061-15538397,15539463-15539727
          Length = 933

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 127 FDYTSFALAIVESDELLHASRSWGGDE 47
           +D++   L+I E D +++  + W GD+
Sbjct: 781 YDFSRAILSITEGDSIINIEKKWIGDQ 807


>04_04_1672 - 35242468-35243235,35243481-35243645
          Length = 310

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 29  PTPATRLITTPGPG--SVQQLVTFYNSQGKG 115
           P P   +   PGPG  SVQ L+  + S+G G
Sbjct: 136 PAPLRLVNQLPGPGTSSVQALIDLFGSRGMG 166


>10_06_0140 + 11147019-11147791,11148301-11150524
          Length = 998

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 31  YSSDA--AHHHPRTWKRAAARH 90
           Y SDA  A  HPR W RAA ++
Sbjct: 201 YESDAVAAQFHPRIWVRAAGKN 222


>03_02_0314 + 7398247-7400877
          Length = 876

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 14  PVPVYPTPATRLITTPGPGSVQQLVTFYNS 103
           P P +P P+  L     P S + LV F+ S
Sbjct: 93  PSPPFPAPSNLLAVLRAPSSSRSLVVFFPS 122


>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
            6087354-6088391,6089733-6089925,6090326-6090375,
            6090470-6090744,6091114-6091180,6091189-6091278,
            6091301-6091381,6091435-6091593
          Length = 1414

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 11   KPVPVYPTPATRLITTPGPGSVQQLVTFYNSQ 106
            + +PV PTP   L   P P S+QQL   Y  Q
Sbjct: 984  RQLPVPPTPQQPLPPPPPPPSLQQLHHPYQHQ 1015


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,852,837
Number of Sequences: 37544
Number of extensions: 180531
Number of successful extensions: 491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)