Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0313
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22155| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_21642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_41851| Best HMM Match : Pkinase (HMM E-Value=0)                     27   5.8  
SB_35327| Best HMM Match : Cellulase (HMM E-Value=4e-05)               27   7.7  

>SB_22155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 50  ITTPGPGSVQQLVTFYNSQGKGSVIKPYSYSDAVKQG*TFNEN 178
           I +P PG   +L+T  +   +  +I P S++   KQG T   N
Sbjct: 17  ILSPRPGDSMELITLQSYHPQQDMITPSSHTHPTKQGDTMELN 59


>SB_21642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 50  ITTPGPGSVQQLVTFYNSQGKGSVIKPYSYSDAVKQG*TFNEN 178
           I +P PG   +L+T  +   +  +I P S++   KQG T   N
Sbjct: 17  ILSPRPGDSMELITLQSYHPQQDMITPSSHTHPTKQGDTMELN 59


>SB_41851| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 967

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = +3

Query: 198 YCGNIVILLRLEIFLSTFSLAVEKTKTL*FV 290
           +  ++ ++ +L+++   ++LAV+KT+TL F+
Sbjct: 825 HSNHLALIFKLKVYSVDYNLAVKKTRTLSFL 855


>SB_35327| Best HMM Match : Cellulase (HMM E-Value=4e-05)
          Length = 353

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 65  PGSVQQLVTFYNSQGKGSVIKPYSYSDAVKQG*TFN 172
           P +V  ++    S+G  + I P  Y D +KQG + N
Sbjct: 6   PVAVALIICLQLSEGTNTPILPSDYQDVIKQGFSTN 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,381,762
Number of Sequences: 59808
Number of extensions: 210025
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)