Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0313
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016686-7|AAB66241.2|  664|Caenorhabditis elegans C-type lectin...    27   3.9  
U41014-3|AAK32948.1|  519|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AC199172-4|ABO33272.1|  304|Caenorhabditis elegans F-box a prote...    26   9.0  

>AF016686-7|AAB66241.2|  664|Caenorhabditis elegans C-type lectin
           protein 44 protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 26  YPTPATRLITTPGPGSVQQLVTFYNSQGKGSVIKPYSYSDAVK 154
           YP P T LIT P PG++ QL         G  I  YS  D  K
Sbjct: 419 YPNPCTYLITEP-PGTIAQLRFAELHLPLGRTIVLYSGIDETK 460


>U41014-3|AAK32948.1|  519|Caenorhabditis elegans Hypothetical
           protein C06G1.1 protein.
          Length = 519

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 148 GIAVTVRFDYTSFALAIVESDELLHAS 68
           GI + + FDYT  A  +   D++LH S
Sbjct: 465 GIQLPIMFDYTQQAANVSIEDDMLHIS 491


>AC199172-4|ABO33272.1|  304|Caenorhabditis elegans F-box a protein
           protein 29 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 382 KSSINLFYIN*IFKHLPLSTLLTVS*IFN*KTNYNVFVFSTANENVLKKISSLNR 218
           K  +N+         +PL  +LT+  + N KT   + ++ +   +  KKI+SL++
Sbjct: 134 KEDVNIHVETIALTFIPLDKVLTILPLLNAKTLREISLWESFEIDQFKKITSLDQ 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,570,708
Number of Sequences: 27780
Number of extensions: 159449
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)