Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0313
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   2.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   9.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 28  PY-SSDAAHHHPRTWKRAAARHF 93
           PY S+ AAHHH +  +  AA  F
Sbjct: 90  PYVSAAAAHHHHQQQQAVAAAAF 112


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 349 IFKHLPLSTLLTVS*IFN*KTNYN 278
           IFK+LP  TL+ +S +   +T YN
Sbjct: 220 IFKNLPEETLIKISDVLE-ETFYN 242


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 65   PGSVQQLVTFYNSQGKGSVIKPYSYSDAVKQ 157
            PG ++ L+T +  QG+   IK    S+  +Q
Sbjct: 1030 PGQIKSLLTGHGLQGQTIFIKQSPSSNQSQQ 1060


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 14  PVPVYPTPAT 43
           P PV PTP T
Sbjct: 157 PTPVTPTPTT 166


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 20  PVYPTPATRLITTPGPGSV 76
           P Y T      +TPG GS+
Sbjct: 223 PSYTTATMATTSTPGSGSL 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,701
Number of Sequences: 438
Number of extensions: 1883
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)