Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0313
(404 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 33 0.072
At2g29740.1 68415.m03614 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.39
At1g07260.1 68414.m00772 UDP-glucoronosyl/UDP-glucosyl transfera... 30 0.68
At1g14430.1 68414.m01711 glyoxal oxidase-related low similarity ... 28 2.7
At5g65100.1 68418.m08189 ethylene insensitive 3 family protein c... 27 3.6
At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat... 27 4.8
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 27 4.8
At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA methyltran... 27 6.3
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 33.1 bits (72), Expect = 0.072
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 148 GIAVTVRFDYTSFALAIVESDELLHASRSW--GGDEPRR 38
G+AV +R DY S +V DE+ A RS GGDE R+
Sbjct: 404 GLAVDLRMDYVSSRGGLVTCDEIARAVRSLMDGGDEKRK 442
>At2g29740.1 68415.m03614 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 474
Score = 30.7 bits (66), Expect = 0.39
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -2
Query: 148 GIAVTVRFDYTSFALAIVESDELLHASRSW--GGDEPRR 38
G+A+ +R DY S IV++DE+ A RS G D PRR
Sbjct: 406 GLALEMRLDYVSEYGEIVKADEIAGAVRSLMDGEDVPRR 444
>At1g07260.1 68414.m00772 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 476
Score = 29.9 bits (64), Expect = 0.68
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -2
Query: 148 GIAVTVRFDYTSFALAIVESDELLHASRSW--GGDEPRR 38
G+AV +R DY S IV+++E+ A RS G D PR+
Sbjct: 403 GLAVELRLDYVSAYGEIVKAEEIAGAIRSLMDGEDTPRK 441
>At1g14430.1 68414.m01711 glyoxal oxidase-related low similarity to
glyoxal oxidase precursor (glx1) [Phanerochaete
chrysosporium] GI:1050302
Length = 849
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 29 PTPATRLITTPGPGSVQQLVTFYNSQGKGSVIKP 130
PTP ++ P S L+ FYN G V+ P
Sbjct: 568 PTPREKIFDFVCPSSCDGLICFYNLYKSGIVVNP 601
>At5g65100.1 68418.m08189 ethylene insensitive 3 family protein
contains Pfam profile: PF04873 ethylene insensitive 3
Length = 557
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 48 SSPPQDLEACSSSSLSTIARAKEV*SNRTVTAMP*SKVKHLTKISRI 188
SSP A SSSS S I R E + + S +K++ KI +
Sbjct: 67 SSPSSSTSASSSSSSSVIVRRTEASRRKKMARSQDSVLKYMMKIMEV 113
>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
polymerase II subunit A) {Homo sapiens}; contains Pfam
profiles: PF03175 DNA polymerase type B, organellar and
viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2138
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 7 D*ACASVPYSSDAAHHHPRTWKRAAAR 87
D C +P++ D + P +W+R AA+
Sbjct: 1546 DFPCVRIPFNDDDNSYQPVSWQRPAAK 1572
>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
polymerase II subunit A) {Homo sapiens}; contains Pfam
profiles: PF03175 DNA polymerase type B, organellar and
viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2271
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 7 D*ACASVPYSSDAAHHHPRTWKRAAAR 87
D C +P++ D + P +W+R AA+
Sbjct: 1589 DFPCVRIPFNDDDNSYQPVSWQRPAAK 1615
>At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to SP|Q9P804
N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC
2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
Length = 691
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 39 RRGSSPPQDLEACSSSSLSTIARAKEV 119
RR PP+ LEA S+S L + A+EV
Sbjct: 214 RRELKPPRVLEALSASGLRALRYAREV 240
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,946,331
Number of Sequences: 28952
Number of extensions: 144236
Number of successful extensions: 351
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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