Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0310
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 1.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 25 2.3
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 25 2.3
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 3.1
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 3.1
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 24 4.0
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 23 7.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 23 7.1
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 9.3
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 23 9.3
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 23 9.3
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 23 9.3
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 132 GYLKRVIVTPAVYPRLLEFLHVDIQST 52
G+++R+ V YP LLE+L++ + S+
Sbjct: 76 GFIERISVILRDYPDLLEYLNIFLPSS 102
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.0 bits (52), Expect = 2.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 126 LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 34
L + IVT + + RLLE+L D S Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.0 bits (52), Expect = 2.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 291 LQCQTRVKLNRVSFPADSPKPVPLAVVSL 205
L+C+T +N P KP+PL+ V L
Sbjct: 272 LECKTAKVVNITQKPKTKYKPLPLSTVEL 300
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 138 PRHLISDAHEWINEIPTVPIYYLAKPQP 221
P LI+D + I ++PT PIY +A P
Sbjct: 303 PASLINDLLD-IKKVPTKPIYDMASEYP 329
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 174 NEIPTVPIYYLAKPQP 221
NE+PTVPI Y KP P
Sbjct: 274 NEVPTVPIRY--KPPP 287
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 24.2 bits (50), Expect = 4.0
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 141 EAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGH 13
E++G L RV++ P ++EFL DI G+ S + EGH
Sbjct: 895 ESYGKLYRVVLHPEHEGAVVEFL--DIHDAGKASLAL---EGH 932
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 23.4 bits (48), Expect = 7.1
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -2
Query: 135 FGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGH 13
FG+++ V A + RL+ H + + CV+T + H
Sbjct: 471 FGHIEGVWEIAADHLRLISGAHDGVVKVWEACECVHTLKNH 511
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.4 bits (48), Expect = 7.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 147 LISDAHEWINEIPTVPIYYLAKPQPRERAWE 239
L S AH+ ++++P VP + P P+ + E
Sbjct: 749 LASLAHDDLDDLPAVPRIFSPPPLPKTPSGE 779
>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 163
Score = 23.0 bits (47), Expect = 9.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 73 KKFKQARVNGGSNYDSLK 126
KK + ++ GG N+D+LK
Sbjct: 93 KKKEAEKIEGGKNHDNLK 110
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 23.0 bits (47), Expect = 9.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 126 GSQMPRHLISDAHEWINEI 182
G +P ISD E INEI
Sbjct: 598 GDSVPNRYISDIQEIINEI 616
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 23.0 bits (47), Expect = 9.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 188 CPYLLSSETTAKGTGLGESAGKE 256
C LLSS TAK G S G E
Sbjct: 700 CSNLLSSSLTAKAISEGVSKGLE 722
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 23.0 bits (47), Expect = 9.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +3
Query: 138 PRHLISDAHEWINEIPTVPIYYLA 209
P L ++AH+W+N + Y++
Sbjct: 210 PDFLFTNAHKWLNSPAACTVLYVS 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,144,645
Number of Sequences: 5004
Number of extensions: 19160
Number of successful extensions: 46
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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