Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0310
(295 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 30 0.37
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 0.37
08_01_0516 - 4499797-4499949,4500040-4500617,4500699-4500756,450... 27 2.0
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174... 27 2.6
10_02_0074 - 4965688-4966638,4966877-4966906,4968656-4968927,496... 26 4.6
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821 26 4.6
11_05_0084 + 18962892-18963383 26 6.1
08_02_0478 + 17621678-17623768 26 6.1
07_03_1623 - 28196981-28197532,28197667-28198058,28198472-281986... 26 6.1
01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093 26 6.1
04_01_0605 + 7944514-7944637,7944930-7945198,7945467-7945559,794... 25 8.0
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 126 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGK 254
G+ PR + D EW N PT+ ++ + +PRE Q+ K
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLK 1435
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 0.37
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 150 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 49
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>08_01_0516 -
4499797-4499949,4500040-4500617,4500699-4500756,
4500855-4500932,4501032-4501091,4501219-4501332,
4501436-4501594
Length = 399
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = -2
Query: 282 QTRVKLNRVSFPADSPKPVPLAVVSLDSR*GQW---ESR*SIHARH*LDDEAFGYLKRVI 112
Q +NR S PA P P+ VV+ + QW + R + R L A G R +
Sbjct: 136 QQSAYINRSSNPATLPAPIDSGVVTFEVEYAQWVEEQGRQTAELRASLQAAAEGPELRAV 195
Query: 111 VTPAV--YPRL 85
V A+ Y RL
Sbjct: 196 VEAALAHYDRL 206
>08_01_0217 +
1738321-1739104,1739683-1739915,1740002-1740292,
1740524-1740616,1740912-1741040,1741522-1741695,
1741883-1741990,1742073-1742279
Length = 672
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 185 HCPYLLSSETTAKGTGLGESAGKETLLSLTLVWH 286
H P L S TT T G G TL + WH
Sbjct: 52 HLPPLPVSTTTTTSTSPGNGNGNATLFQVQPFWH 85
>10_02_0074 -
4965688-4966638,4966877-4966906,4968656-4968927,
4969092-4969329
Length = 496
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 126 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERA 233
GS H+ D H+W E T+P P E A
Sbjct: 461 GSNQGLHICKDGHQWPLEESTMPTVECVLQHPGESA 496
>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
Length = 998
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 147 DDEAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTR 22
D++ G+L+R ++ P R + L V++QS ++ V+ R
Sbjct: 99 DEDLAGWLRRTVLRPLTTLRAMYKLAVEVQSLKARALMVSER 140
>11_05_0084 + 18962892-18963383
Length = 163
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 126 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQ 218
G PRH A I+ +P+ I+Y AKP+
Sbjct: 114 GHGAPRHAAEGAIVAIDLLPSASIHYRAKPR 144
>08_02_0478 + 17621678-17623768
Length = 696
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = -2
Query: 186 WESR*SIHARH*LDDEAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSH 37
W + + + +DDEA + R++ V+P + F + I S + H
Sbjct: 263 WNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSI-ISSCSEHGH 311
>07_03_1623 -
28196981-28197532,28197667-28198058,28198472-28198661,
28198773-28198972,28199733-28199838
Length = 479
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 208 RNHSQGNGLGRISGERDPVELDSSLAL 288
++HS+G G G SG D +++ LAL
Sbjct: 417 QDHSEGYGSGSSSGRNDGLDVPELLAL 443
>01_01_1167 - 9301114-9301490,9302251-9302808,9303054-9303093
Length = 324
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 192 GQWESR*SIHARH*LDDEAF--GYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTR 22
G W R RH DE G+L+R ++ P R + L +D+QS ++ V+ R
Sbjct: 35 GFWHHR----GRHYRGDEGLVAGWLRRTVIQPLETLRAMHKLALDVQSLKARALKVSER 89
>04_01_0605 +
7944514-7944637,7944930-7945198,7945467-7945559,
7945824-7945958,7946448-7946538,7947837-7947929,
7948418-7948578,7948589-7948675
Length = 350
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -2
Query: 282 QTRVKLNRVSFPADSPKPVPLAVVSLDSR*GQW 184
Q R V D PKP PL V+ L S QW
Sbjct: 290 QNRSSTTLVKVTCDGPKPSPLTVLGLVS--DQW 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,077,769
Number of Sequences: 37544
Number of extensions: 143647
Number of successful extensions: 387
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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