Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0310
         (295 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   5e-08
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)                     47   3e-06
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   4e-05
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)                 40   3e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   5e-04
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   6e-04
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.6  
SB_4748| Best HMM Match : RVT_1 (HMM E-Value=0.0022)                   26   4.6  
SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.0  
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.0  
SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.0  

>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +3

Query: 135 MPRHLISDAHEWINEIPTVPIYYLAKP 215
           MPRHLISDAHEWINEIPTVPI    +P
Sbjct: 1   MPRHLISDAHEWINEIPTVPIIEFLQP 27


>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
          Length = 167

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 52  SALNVNVKKFKQARVNGGSNYDSL 123
           +ALNV VKKF QARVNGGSNYDSL
Sbjct: 28  AALNVKVKKFNQARVNGGSNYDSL 51


>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = +1

Query: 55  ALNVNVKKFKQARVNGGSNYDSL 123
           ALNV VKKF QARVNG SNYDSL
Sbjct: 2   ALNVKVKKFNQARVNGWSNYDSL 24


>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
          Length = 521

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -1

Query: 64  HSEHWAEITLRQHPRGPSQCF 2
           ++EHWAEITLRQH   PSQCF
Sbjct: 48  NNEHWAEITLRQHRFRPSQCF 68


>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 18/24 (75%), Positives = 19/24 (79%)
 Frame = +1

Query: 49  PSALNVNVKKFKQARVNGGSNYDS 120
           PSALNV VKKF QARVNGG   +S
Sbjct: 31  PSALNVKVKKFNQARVNGGDPLES 54


>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = -2

Query: 255 SFPADSPKPVPLAVVSLDSR 196
           SFPAD  KPVPLAVVSLDSR
Sbjct: 111 SFPADCAKPVPLAVVSLDSR 130


>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1441

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 129  YLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNT 25
            Y  RVIV  ++ PR+L+ LH   Q T        T
Sbjct: 1051 YQDRVIVLTSLRPRVLQHLHAAQQGTSSMEQRART 1085


>SB_4748| Best HMM Match : RVT_1 (HMM E-Value=0.0022)
          Length = 1012

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 135 FGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNT 25
           F Y  RVIV  ++ PR+L+ L+V  Q T        T
Sbjct: 811 FLYQDRVIVPTSLRPRVLQHLYVAHQGTSSMEQRART 847


>SB_42414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +3

Query: 168 WINEIPTVPIYYLAKPQPRERAW 236
           W+  +P++ ++Y+  P  R++ W
Sbjct: 171 WVFTLPSILVFYVTIPDCRKKTW 193


>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1243

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 129  YLKRVIVTPAVYPRLLEFLHVDIQST 52
            Y  RV+V P+V  R+L  LH   Q T
Sbjct: 991  YQDRVVVPPSVRQRVLHSLHAAHQGT 1016


>SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 185 HCPYLLSSETTAKGTGLGESAGKE 256
           HCP +L S       GL + AG+E
Sbjct: 133 HCPRVLCSNANVLPIGLSDQAGEE 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,019,273
Number of Sequences: 59808
Number of extensions: 162593
Number of successful extensions: 368
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)