Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0310
         (295 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058593-1|AAL13822.1|  767|Drosophila melanogaster LD28817p pro...    28   1.8  
AE014297-1398|AAF54712.1|  767|Drosophila melanogaster CG6962-PA...    28   1.8  
AE014296-410|ABI31230.1| 3651|Drosophila melanogaster CG33484-PD...    26   7.1  

>AY058593-1|AAL13822.1|  767|Drosophila melanogaster LD28817p
           protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 194 RDSGNLVNPFMRVTN*MTRHLATLRES*LLPPFTRACLNFFTLTF 60
           R  G L N + ++    T+   TLRE   +P   R C++ F  TF
Sbjct: 536 RSEGFLKNFYKKIFGECTQEEVTLREFSRIPEVLRQCIDAFCRTF 580


>AE014297-1398|AAF54712.1|  767|Drosophila melanogaster CG6962-PA
           protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 194 RDSGNLVNPFMRVTN*MTRHLATLRES*LLPPFTRACLNFFTLTF 60
           R  G L N + ++    T+   TLRE   +P   R C++ F  TF
Sbjct: 536 RSEGFLKNFYKKIFGECTQEEVTLREFSRIPEVLRQCIDAFCRTF 580


>AE014296-410|ABI31230.1| 3651|Drosophila melanogaster CG33484-PD,
            isoform D protein.
          Length = 3651

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 183  PTVPIYYLAKPQPR 224
            P  PIY+ AKPQP+
Sbjct: 2877 PPAPIYFTAKPQPQ 2890


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,128,812
Number of Sequences: 53049
Number of extensions: 229694
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 506778984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)