Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0310
(295 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z81042-7|CAE46660.1| 371|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z73976-9|CAA98280.2| 371|Caenorhabditis elegans Hypothetical pr... 27 3.1
AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical... 27 3.1
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 26 5.4
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 25 7.1
Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical pr... 25 9.4
U47144-1|AAB52616.2| 448|Caenorhabditis elegans Hypothetical pr... 25 9.4
AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical
protein T22A3.5 protein.
Length = 790
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 170 D*RDSHCPYLLSSETTAKGTGLGESAG--KETLLSLT 274
D R+ HCPY ++ T K L E AG KE+L+ L+
Sbjct: 388 DTRNIHCPYKATALLTMKMCTLREMAGQCKESLVVLS 424
>Z81042-7|CAE46660.1| 371|Caenorhabditis elegans Hypothetical
protein T07C12.11 protein.
Length = 371
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 138 PRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGK 254
P H ++D I ++ ++ I Y +P ER W++ R K
Sbjct: 38 PLHKVTDYKHEIWKLISIEIGYDGQPVELERKWKHMRDK 76
>Z73976-9|CAA98280.2| 371|Caenorhabditis elegans Hypothetical
protein T07C12.11 protein.
Length = 371
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 138 PRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGK 254
P H ++D I ++ ++ I Y +P ER W++ R K
Sbjct: 38 PLHKVTDYKHEIWKLISIEIGYDGQPVELERKWKHMRDK 76
>AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical
protein Y53F4B.13 protein.
Length = 927
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 200 LSSETTAKGTGLGESAGKETLLSLTLVW 283
++S T TGLG +AGK T VW
Sbjct: 116 IASSTQRGRTGLGHNAGKATARDFNEVW 143
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 126 LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 4
L V TP + P L+ F+ ++ +++H VNT+ G +++
Sbjct: 23 LPAVFRTP-IRPDLVSFIADQVRRNRRQAHAVNTKAGKQHS 62
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 3 KHCDGPRGC*RNVISAQCSECQ 68
K CDG R C C ECQ
Sbjct: 142 KRCDGRRDCEDGSDEENCKECQ 163
>Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical protein
ZC247.1 protein.
Length = 4404
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 146 MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRN 42
++RH+ T RE+ ++ P AC F R G N
Sbjct: 3975 LSRHIYTRRETEIMDPAHSACSVFSHTEIRHQGNN 4009
>Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical protein
ZC247.1 protein.
Length = 4404
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 146 MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRN 42
++RH+ T RE+ ++ P AC F R G N
Sbjct: 3975 LSRHIYTRRETEIMDPAHSACSVFSHTEIRHQGNN 4009
>U47144-1|AAB52616.2| 448|Caenorhabditis elegans Hypothetical
protein ZC53.1 protein.
Length = 448
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 203 SSETTAKGTGLGESAGKET 259
SS+TT +GTG G S G T
Sbjct: 33 SSQTTTRGTGSGISIGGNT 51
>AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical
protein ZC247.1 protein.
Length = 4404
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 146 MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRN 42
++RH+ T RE+ ++ P AC F R G N
Sbjct: 3975 LSRHIYTRRETEIMDPAHSACSVFSHTEIRHQGNN 4009
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,440,045
Number of Sequences: 27780
Number of extensions: 108856
Number of successful extensions: 251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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