Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0310
(295 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 0.71
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 0.71
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 29 0.71
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p... 27 2.2
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p... 27 2.2
At3g61570.1 68416.m06896 intracellular protein transport protein... 26 3.8
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi... 26 3.8
At1g49650.1 68414.m05568 cell death associated protein-related s... 26 3.8
At1g15030.1 68414.m01796 expressed protein 25 6.6
At4g33590.1 68417.m04772 hypothetical protein 25 8.7
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 0.71
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 114 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 4
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 0.71
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -2
Query: 114 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 4
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 28.7 bits (61), Expect = 0.71
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 126 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKR 257
G +P + +SD + INE+ P +AK +E + GKR
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 137 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 39
HLAT+ + L P +A N F FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
protein contains Pfam PF03208: PRA1 family protein
Length = 209
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 137 HLATLRES*LLPPFTRACLNFFTLTFRALGRNH 39
HLAT+ + L P +A N F FRA+ RN+
Sbjct: 174 HLATILHASLRTPNLKARFNTFREEFRAVWRNY 206
>At3g61570.1 68416.m06896 intracellular protein transport protein
USO1-related contains weak similarity to intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]
Length = 712
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 90 RLLEFLHVDIQSTGQKSHCVNTREGH 13
+LLE H+ ++ TGQ+SH + H
Sbjct: 253 KLLEIKHLQMKLTGQESHAIGPGMEH 278
>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
to receptor kinase GI:498278 from [Petunia
integrifolia]; contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 652
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 197 DRDSGNLVNPFMRVTN*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNHIASTPA 21
+R SG + + +R++ T ++ S +PP +A L FF ++ L HI T A
Sbjct: 143 NRFSGKIPSSLLRLSRLYTFYVQDNLFSGSIPPLNQATLRFFNVSNNQLS-GHIPPTQA 200
>At1g49650.1 68414.m05568 cell death associated protein-related
similar to PrMC3 [Pinus radiata] GI:5487873; weak
similarity to cell death associated protein [Nicotiana
tabacum] GI:7417008, hsr203J [Nicotiana tabacum]
GI:22830761
Length = 374
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 117 LS*GSQMPRHLISDAHEWINEIPTVPIYY 203
L+ G+++P + WINE P PIY+
Sbjct: 122 LAAGNKLPLLIYFHGGAWINESPFSPIYH 150
>At1g15030.1 68414.m01796 expressed protein
Length = 360
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = +3
Query: 126 GSQMPRHLISDA-----HEWINEI-PTVPIYYLAKPQPRERAWENQRGKRP 260
GS + +H +S+A +++ + P+VP +YL+K RER + + P
Sbjct: 33 GSALLKHHVSEASSSNVERFLDSVTPSVPAHYLSKTIVRERGGSDVESQVP 83
>At4g33590.1 68417.m04772 hypothetical protein
Length = 466
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 282 QTRVKLNRVSFPADSPKPVPLAVVSLDSR*GQWES 178
QT+ + FP+DS K L + +D G W S
Sbjct: 109 QTKGEAQYQEFPSDSSKGRLLCLKGVDEHDGSWNS 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,195,494
Number of Sequences: 28952
Number of extensions: 106699
Number of successful extensions: 275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -