Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0309
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)                    28   4.5  
SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.8  
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_39760| Best HMM Match : rve (HMM E-Value=1.1e-29)                   27   7.8  

>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
          Length = 610

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 298 LEYEQTLQR*RHLWDSRTCSNFK-E*LFD*LQNSCPPCV 185
           +E E+ L + R LW SR C   K E + + L  SC  C+
Sbjct: 251 VEKEELLSKVRLLWKSRNCEKQKVENVSESLDESCKVCM 289


>SB_26192| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 777

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 253 YPTNDVIVVRFVRTQVLSSKVMRLRTENMINQTNRYLLSVR 375
           +P ++    R+VRT   + K M    EN+  + +R+LLS R
Sbjct: 232 HPASNEFAERYVRTFKETMKKMGGEKENLDTKLSRFLLSYR 272


>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 48  TYVGTQKRPFGTNNTIDTDYTSRVHCQLINRSTNVKLMLKYRIDKITQG-GHEFCNQSNN 224
           TY+   +  +  NNT D     R  C ++  + + +  L Y + +IT+  G   C Q N 
Sbjct: 174 TYIQALRFAYRLNNTEDHVKNFRPQCLVLTGAPSSRPNLTYIVSQITKNVGLMVCGQVNV 233

Query: 225 YSL 233
            SL
Sbjct: 234 GSL 236


>SB_39760| Best HMM Match : rve (HMM E-Value=1.1e-29)
          Length = 634

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 253 YPTNDVIVVRFVRTQVLSSKVMRLRTENMINQTNRYLLSVR 375
           +P ++    R+VRT   + K M    EN+  + +R+LLS R
Sbjct: 369 HPASNGFAERYVRTFKKTMKKMGGEKENLDTKLSRFLLSYR 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,108
Number of Sequences: 59808
Number of extensions: 238076
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)