Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0309
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61955-4|AAC24407.1|  772|Caenorhabditis elegans Zygotic epiderm...    28   2.9  
U61955-3|AAC24406.1|  775|Caenorhabditis elegans Zygotic epiderm...    28   2.9  
U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epiderm...    28   2.9  
AF057568-1|AAC33438.1|  772|Caenorhabditis elegans kinesin-like ...    28   2.9  
AF057567-1|AAC33437.1|  775|Caenorhabditis elegans kinesin-like ...    28   2.9  

>U61955-4|AAC24407.1|  772|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform b protein.
          Length = 772

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 327 SKSHNFTTEYLSTNK--PYNDDVICGIAGRAVILKNNYSTD 211
           S S   T  Y    K   YNDD++C +    V + NNY  D
Sbjct: 183 STSREITDRYCEAIKLSGYNDDMVCSVFVTYVEIYNNYCYD 223


>U61955-3|AAC24406.1|  775|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform a protein.
          Length = 775

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 327 SKSHNFTTEYLSTNK--PYNDDVICGIAGRAVILKNNYSTD 211
           S S   T  Y    K   YNDD++C +    V + NNY  D
Sbjct: 183 STSREITDRYCEAIKLSGYNDDMVCSVFVTYVEIYNNYCYD 223


>U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform c protein.
          Length = 777

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 327 SKSHNFTTEYLSTNK--PYNDDVICGIAGRAVILKNNYSTD 211
           S S   T  Y    K   YNDD++C +    V + NNY  D
Sbjct: 183 STSREITDRYCEAIKLSGYNDDMVCSVFVTYVEIYNNYCYD 223


>AF057568-1|AAC33438.1|  772|Caenorhabditis elegans kinesin-like
           protein ZEN-4b protein.
          Length = 772

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 327 SKSHNFTTEYLSTNK--PYNDDVICGIAGRAVILKNNYSTD 211
           S S   T  Y    K   YNDD++C +    V + NNY  D
Sbjct: 183 STSREITDRYCEAIKLSGYNDDMVCSVFVTYVEIYNNYCYD 223


>AF057567-1|AAC33437.1|  775|Caenorhabditis elegans kinesin-like
           protein ZEN-4a protein.
          Length = 775

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 327 SKSHNFTTEYLSTNK--PYNDDVICGIAGRAVILKNNYSTD 211
           S S   T  Y    K   YNDD++C +    V + NNY  D
Sbjct: 183 STSREITDRYCEAIKLSGYNDDMVCSVFVTYVEIYNNYCYD 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,780,301
Number of Sequences: 27780
Number of extensions: 175266
Number of successful extensions: 472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)